Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 9.7e-55 216.5 102 100.0
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 1.3e-43 179.5 100 81.0
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 2.9e-43 178.3 102 77.5
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 3.8e-43 177.9 100 78.0
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 6.5e-43 177.2 100 79.0
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 6.5e-43 177.2 100 78.0
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 6.5e-43 177.2 100 81.0
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 1.5e-42 176.0 100 80.0
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 3.2e-42 174.9 100 79.0
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 4.2e-42 174.5 100 79.0
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 7.2e-42 173.7 100 75.0
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 7.2e-42 173.7 100 78.0
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 1.2e-41 172.9 100 78.0
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 3.6e-41 171.4 100 76.0
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 6.1e-41 170.6 100 77.0
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 1.0e-40 169.9 102 73.5
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 1.8e-40 169.1 102 74.5
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 2.3e-40 168.7 100 76.0
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 2.3e-40 168.7 100 78.0
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 3.0e-40 168.3 100 76.0
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 4.0e-40 167.9 100 76.0
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 4.0e-40 167.9 100 76.0
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 4.0e-40 167.9 102 75.5
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 5.2e-40 167.5 100 75.0
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 6.7e-40 167.2 102 73.5
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 8.8e-40 166.8 102 73.5
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 2.0e-39 165.6 100 75.0
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 2.6e-39 165.2 102 74.5
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 4.4e-39 164.5 100 73.0
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 7.5e-39 163.7 101 73.3
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 1.3e-38 162.9 101 71.3
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 1.3e-38 162.9 102 71.6
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 1.7e-38 162.5 100 72.0
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 2.8e-38 161.8 102 73.5
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 2.8e-38 161.8 100 72.0
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 2.8e-38 161.8 100 72.0
CANSAT11G0807 Cannabis sativa HOM05D006119 ORTHO05D007641 2.8e-38 161.8 102 72.5
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 4.8e-38 161.0 100 72.0
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 8.2e-38 160.2 99 72.7
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 8.2e-38 160.2 102 73.5
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 8.2e-38 160.2 100 73.0
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 1.1e-37 159.8 102 69.6
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 1.4e-37 159.5 102 69.6
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 1.4e-37 159.5 100 72.0
MD15G1154500 Malus domestica HOM05D006119 ORTHO05D007641 1.4e-37 159.5 102 70.6
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 1.4e-37 159.5 102 70.6
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 1.8e-37 159.1 100 73.0
Prupe.7G260900 Prunus persica HOM05D006119 ORTHO05D007641 3.1e-37 158.3 102 70.6
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 3.1e-37 158.3 100 72.0
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 3.1e-37 158.3 99 70.7
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 4.1e-37 157.9 100 72.0
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 7.0e-37 157.1 87 81.6
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 7.0e-37 157.1 87 81.6
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 7.0e-37 157.1 87 81.6
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 7.0e-37 157.1 97 72.2
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 9.1e-37 156.8 97 71.1
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 1.2e-36 156.4 100 70.0
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 2.0e-36 155.6 102 69.6
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 2.0e-36 155.6 104 69.2
COL.COLO4_18789 Corchorus olitorius HOM05D006119 ORTHO05D007641 3.5e-36 154.8 100 68.0
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 4.5e-36 154.5 87 82.8
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 1.0e-35 153.3 100 70.0
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 1.7e-35 152.5 99 69.7
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 2.2e-35 152.1 100 70.0
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 2.9e-35 151.8 100 69.0
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 3.8e-35 151.4 100 70.0
MD02G1009100 Malus domestica HOM05D006119 ORTHO05D007641 6.5e-35 150.6 102 68.6
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 6.5e-35 150.6 100 68.0
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 8.5e-35 150.2 99 69.7
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 1.5e-34 149.4 100 67.0
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 1.5e-34 149.4 103 67.0
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 1.9e-34 149.1 100 67.0
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 3.2e-34 148.3 100 66.0
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 4.2e-34 147.9 100 64.0
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 5.5e-34 147.5 94 71.3
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 5.5e-34 147.5 94 71.3
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 7.2e-34 147.1 103 68.0
Medtr4g131150 Medicago truncatula HOM05D006119 ORTHO05D007641 1.2e-33 146.4 102 64.7
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 1.2e-33 146.4 100 68.0
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 2.1e-33 145.6 100 67.0
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 2.1e-33 145.6 100 65.0
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 2.1e-33 145.6 111 63.1
RcHm_v2.0_Chr2g0085901 Rosa chinensis HOM05D006119 ORTHO05D007641 2.7e-33 145.2 102 64.7
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 2.7e-33 145.2 98 69.4
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 6.1e-33 144.1 100 62.0
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 6.1e-33 144.1 89 73.0
FvH4_1g01100 Fragaria vesca HOM05D006119 ORTHO05D007641 8.0e-33 143.7 100 65.0
FAN19G0026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 8.0e-33 143.7 100 65.0
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 8.0e-33 143.7 100 63.0
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 1.0e-32 143.3 101 64.4
FAN26G3335 Fragaria x ananassa HOM05D006119 ORTHO05D007641 1.4e-32 142.9 100 65.0
FAN28G1026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 1.4e-32 142.9 100 65.0
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 1.4e-32 142.9 111 61.3
FAN23G1211 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.3e-32 142.1 100 64.0
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 2.3e-32 142.1 89 70.8
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 3.0e-32 141.7 100 61.0
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 6.8e-32 140.6 98 62.2
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 6.8e-32 140.6 87 73.6
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 3.4e-31 138.3 122 54.9
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 1.3e-30 136.3 87 70.1
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 1.7e-30 136.0 89 69.7
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.1e-29 133.3 88 63.6
Sp6g19680 Schrenkiella parvula HOM05D006119 ORTHO05D007641 3.1e-29 131.7 75 78.7
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 9.1e-29 130.2 82 69.5
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 2.7e-28 128.6 94 59.6
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 3.5e-28 128.3 94 62.8
Rhsim03G0256600 Rhododendron simsii HOM05D006119 ORTHO05D007641 3.5e-28 128.3 116 55.2
Nitab4.5_0001478g0060 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.3e-27 125.6 101 57.4
Nitab4.5_0002315g0130 Nicotiana tabacum HOM05D006119 ORTHO05D007641 3.8e-27 124.8 100 58.0
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 5.0e-27 124.4 100 56.0
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 6.5e-27 124.0 74 70.3
Nitab4.5_0013449g0010 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.9e-26 122.5 88 60.2
Glyma.17G075100 Glycine max HOM05D006119 ORTHO05D007641 5.5e-26 120.9 73 76.7
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 1.2e-25 119.8 72 72.2
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 2.1e-25 119.0 101 56.4
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 3.0e-24 115.2 98 56.1
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 3.0e-24 115.2 74 64.9
CAN.G551.35 Capsicum annuum HOM05D006119 ORTHO05D007641 2.6e-23 112.1 75 65.3
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 4.4e-23 111.3 73 65.8
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 2.2e-22 109.0 86 58.1
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 8.3e-22 107.1 96 52.1
SEGI_38164 Sequoiadendron giganteum HOM05D006119 ORTHO05D007641 3.3e-18 95.1 63 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1886 Anthoceros agrestis HOM05D006119 ORTHO05D007641 8.0e-17 90.5 64 60.9
Aqoxy4G01852 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 1.0e-16 90.1 58 63.8
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 4.4e-15 84.7 48 72.9
CDE05G1090 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 7.5e-15 84.0 66 59.1
Nitab4.5_0003612g0050 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.4e-13 79.7 65 56.9
Pp3c22_3250 Physcomitrium patens HOM05D006119 ORTHO05D007641 7.3e-10 67.4 68 47.1
PSO339G5888 Papaver somniferum HOM05D006119 ORTHO05D007641 6.2e-09 64.3 85 41.2
Rhsim04G0128900 Rhododendron simsii HOM05D002149 ORTHO05D002154 1.4e-08 63.2 36 77.8
MBI15_g07754_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 2.3e-08 62.4 52 59.6


User provided reference genes

Program Settings