Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 1.4e-201 706.1 355 100.0
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 3.8e-122 442.2 353 66.9
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.9e-121 439.9 353 66.6
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 1.9e-121 439.9 350 66.0
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 5.5e-121 438.3 352 67.0
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.2e-120 437.2 350 64.9
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.7e-120 436.0 353 66.0
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 2.7e-120 436.0 353 66.0
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.7e-120 436.0 356 67.4
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 6.0e-120 434.9 352 67.0
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 6.0e-120 434.9 353 65.7
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 6.0e-120 434.9 355 66.2
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 1.8e-119 433.3 353 66.9
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.0e-119 432.6 354 65.3
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 5.1e-119 431.8 355 64.8
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 5.1e-119 431.8 344 66.9
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 6.7e-119 431.4 354 65.8
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 8.7e-119 431.0 353 65.2
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 1.1e-118 430.6 355 65.1
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 1.5e-118 430.3 353 65.7
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 2.5e-118 429.5 352 65.6
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 4.3e-118 428.7 343 65.3
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 6.2e-117 424.9 351 63.5
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 6.2e-117 424.9 352 65.1
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 1.5e-115 420.2 353 65.2
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 5.8e-115 418.3 352 64.5
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 3.8e-114 415.6 385 61.0
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 4.9e-114 415.2 380 62.1
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 4.2e-113 412.1 376 62.5
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 7.1e-113 411.4 363 62.5
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.2e-112 410.6 382 60.2
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 2.1e-112 409.8 388 62.9
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 2.1e-112 409.8 355 61.7
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 7.9e-112 407.9 382 61.3
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 1.3e-111 407.1 374 60.2
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.8e-111 406.8 383 58.5
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.0e-111 406.0 382 60.7
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 5.1e-111 405.2 363 61.7
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 6.7e-111 404.8 371 62.5
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 8.7e-111 404.4 385 59.7
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 8.7e-111 404.4 356 61.2
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 1.5e-110 403.7 386 59.6
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 3.3e-110 402.5 371 62.3
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 5.7e-110 401.7 382 58.6
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 7.4e-110 401.4 374 59.4
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.4e-110 401.4 372 62.1
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.6e-109 400.2 377 59.2
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 1.6e-109 400.2 391 59.1
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.6e-109 400.2 380 60.0
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 6.3e-109 398.3 385 58.4
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.8e-108 396.7 369 59.9
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 3.1e-108 396.0 378 61.1
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 9.0e-108 394.4 389 58.1
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 9.0e-108 394.4 375 58.4
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 3.4e-107 392.5 395 58.7
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 7.7e-107 391.3 385 59.0
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.3e-106 390.6 316 65.5
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 1.7e-106 390.2 380 58.4
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.7e-106 390.2 391 58.3
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 2.2e-106 389.8 377 57.3
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 6.5e-106 388.3 400 57.5
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.4e-105 387.1 396 58.6
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 1.4e-105 387.1 389 58.9
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 1.9e-105 386.7 364 60.2
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 5.5e-105 385.2 396 57.6
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 5.5e-105 385.2 377 58.4
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 5.5e-105 385.2 394 57.4
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 5.5e-105 385.2 402 56.2
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.2e-104 384.0 333 61.9
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 1.6e-104 383.6 359 60.7
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 1.6e-104 383.6 400 56.8
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 4.6e-104 382.1 364 60.4
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.6e-104 382.1 394 57.1
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 6.1e-104 381.7 402 56.2
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 7.9e-104 381.3 368 59.5
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.0e-103 380.9 378 59.3
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.8e-103 380.2 389 55.5
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 2.3e-103 379.8 393 57.0
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 3.9e-103 379.0 394 57.6
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 5.1e-103 378.6 391 57.0
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 2.0e-102 376.7 350 61.1
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 2.2e-101 373.2 394 56.6
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.4e-100 369.8 382 58.6
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 3.1e-100 369.4 322 61.5
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 5.3e-100 368.6 354 59.0
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 9.1e-100 367.9 386 57.0
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 1.2e-99 367.5 365 59.5
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.6e-99 366.3 381 58.3
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 1.3e-98 364.0 397 55.9
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 2.2e-98 363.2 347 59.9
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 3.8e-98 362.5 364 58.5
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.1e-97 360.9 378 57.1
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.2e-96 357.5 378 56.6
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 2.1e-96 356.7 383 57.4
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.7e-96 355.5 372 57.3
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 6.1e-96 355.1 395 53.4
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 6.1e-96 355.1 365 54.2
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 1.5e-94 350.5 375 55.2
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 9.7e-94 347.8 391 52.7
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 3.7e-93 345.9 352 57.7
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 1.7e-90 337.0 399 50.6
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 2.5e-89 333.2 325 57.5
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 3.2e-89 332.8 351 56.4
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 5.5e-89 332.0 400 50.8
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 2.6e-86 323.2 367 55.3
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.8e-84 317.0 330 52.7
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 5.3e-84 315.5 390 47.7
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 1.6e-83 313.9 307 55.7
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.5e-83 312.8 260 65.4
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 2.2e-82 310.1 282 61.3
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 1.1e-81 307.8 289 57.4
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.8e-79 300.4 281 57.7
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 1.7e-77 293.9 397 44.8
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 4.5e-75 285.8 304 53.3
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 4.5e-75 285.8 339 56.3
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 4.5e-75 285.8 339 56.3
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 6.3e-69 265.4 263 57.8
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.4e-68 264.2 263 57.4
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 2.4e-68 263.5 204 63.2
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.3e-66 257.7 169 74.0
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 2.6e-62 243.4 356 41.6
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 2.0e-54 217.2 199 57.3
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 1.2e-43 181.4 189 54.5
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.1e-43 180.6 186 55.9
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 8.6e-42 175.3 309 39.2
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 9.6e-33 145.2 283 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.5e-30 137.9 163 50.9
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 3.4e-30 136.7 87 70.1
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 8.4e-29 132.1 323 33.1
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 1.9e-25 120.9 145 54.5
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 9.0e-23 112.1 135 51.1
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 2.4e-20 104.0 92 60.9
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 7.1e-20 102.4 140 51.4
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 3.0e-18 97.1 89 55.1
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 3.4e-14 83.6 208 29.3
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 5.8e-14 82.8 105 44.8
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 6.7e-10 69.3 165 29.7
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.1e-09 68.6 50 68.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.9e-09 67.8 273 26.7
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 1.9e-09 67.8 269 23.4
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 4.3e-09 66.6 41 70.7
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 1.1e-07 62.0 75 48.0
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 4.0e-07 60.1 58 51.7
Gorai.011G083100 Gossypium raimondii HOM05D005260 ORTHO05D006390 7.6e-06 55.8 79 46.8


User provided reference genes

Program Settings