Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.0e-182 643.3 330 100.0
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 7.6e-109 397.9 354 58.2
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 2.9e-108 396.0 350 60.9
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 2.9e-108 396.0 336 63.1
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 5.4e-107 391.7 353 60.1
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.1e-106 389.8 353 58.4
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 2.1e-106 389.8 353 58.4
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.3e-105 387.1 352 59.9
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.9e-104 383.3 358 57.5
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.3e-104 382.5 330 61.5
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.4e-101 372.5 381 54.9
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 7.6e-101 371.3 364 56.9
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 1.0e-100 370.9 314 61.1
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.3e-100 370.5 352 56.0
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.9e-100 369.4 406 53.0
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 6.5e-100 368.2 354 55.4
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 8.4e-100 367.9 348 58.0
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.4e-99 367.1 352 56.5
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 2.5e-99 366.3 353 57.2
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 2.7e-98 362.8 407 51.4
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 2.7e-98 362.8 407 51.4
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 4.6e-98 362.1 331 55.9
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 6.0e-98 361.7 353 56.1
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.3e-97 360.5 310 59.7
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 8.7e-97 357.8 353 54.4
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 8.7e-97 357.8 310 60.3
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.5e-96 357.1 317 59.0
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.5e-96 357.1 401 50.1
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.3e-96 355.9 316 58.5
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 3.3e-96 355.9 310 59.4
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 4.3e-96 355.5 304 62.5
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 5.7e-96 355.1 313 58.1
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 3.7e-95 352.4 351 52.7
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 1.1e-94 350.9 354 52.5
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 9.0e-94 347.8 319 56.1
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 4.5e-93 345.5 310 58.1
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 4.5e-93 345.5 350 55.7
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 1.0e-92 344.4 311 55.9
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 5.0e-92 342.0 318 56.6
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.1e-91 340.9 278 61.5
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 5.5e-91 338.6 301 59.5
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 5.5e-91 338.6 315 54.3
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 7.9e-90 334.7 263 66.9
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 5.1e-89 332.0 415 47.5
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.1e-88 330.9 314 54.1
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 3.3e-88 329.3 317 54.3
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 3.3e-88 329.3 314 57.0
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 3.3e-88 329.3 320 55.0
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 9.7e-88 327.8 356 53.9
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.6e-87 327.0 295 59.0
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 2.2e-87 326.6 357 53.5
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 2.4e-86 323.2 316 54.7
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 9.0e-86 321.2 315 55.6
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 1.5e-85 320.5 275 59.3
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.6e-85 319.7 318 54.1
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.6e-85 319.7 409 46.7
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 5.9e-85 318.5 319 54.9
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 1.0e-84 317.8 310 53.9
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.2e-84 316.6 307 55.4
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.2e-84 316.6 307 55.4
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 2.2e-84 316.6 319 56.1
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.2e-84 316.6 310 55.5
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.2e-84 316.6 310 55.5
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 5.0e-84 315.5 367 48.2
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 8.5e-84 314.7 316 55.1
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.2e-83 312.8 314 54.1
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 4.2e-83 312.4 315 54.3
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 4.2e-83 312.4 313 54.3
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.7e-82 309.7 304 53.0
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 6.1e-82 308.5 325 52.3
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 7.9e-82 308.1 301 55.8
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 1.4e-81 307.4 325 52.3
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.8e-81 307.0 329 51.7
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.0e-80 303.5 278 57.2
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 7.4e-80 301.6 342 51.8
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 2.2e-79 300.1 311 51.8
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-78 297.7 281 57.3
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 1.8e-78 297.0 267 58.1
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 2.4e-78 296.6 224 64.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.9e-78 295.0 315 51.4
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.5e-77 293.9 226 65.5
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 7.7e-77 291.6 339 48.4
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 6.5e-76 288.5 229 63.3
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.1e-75 287.7 311 48.6
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 4.2e-75 285.8 306 52.9
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 2.1e-74 283.5 278 53.6
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.4e-73 280.8 227 60.8
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 3.9e-73 279.3 288 52.8
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.7e-73 278.5 293 52.6
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 8.8e-73 278.1 227 60.4
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 5.3e-70 268.9 275 52.7
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 7.0e-70 268.5 327 48.6
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 1.0e-68 264.6 226 60.2
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 8.5e-68 261.5 231 58.0
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.5e-67 260.8 293 49.1
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 8.8e-65 251.5 228 62.3
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 5.7e-64 248.8 216 59.3
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.7e-63 247.3 231 55.0
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 2.2e-60 236.9 317 44.5
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.1e-58 230.3 228 52.2
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 1.0e-57 228.0 322 42.9
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 3.0e-57 226.5 190 63.2
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 3.0e-57 226.5 307 45.0
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.7e-55 219.5 294 45.2
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 3.7e-55 219.5 180 62.8
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 4.1e-54 216.1 317 42.0
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 9.1e-54 214.9 313 41.5
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.0e-53 213.8 327 39.4
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.6e-48 196.8 250 46.8
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.9e-47 192.6 333 36.9
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 5.9e-45 185.7 168 63.1
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.6e-42 176.4 141 60.3
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 1.4e-41 174.5 154 57.8
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 4.0e-41 172.9 223 44.8
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 4.0e-41 172.9 184 52.7
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.5e-40 171.0 147 57.8
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 3.4e-40 169.9 150 56.7
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 5.9e-37 159.1 280 38.6
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 2.8e-34 150.2 124 60.5
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 2.3e-33 147.1 144 52.8
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 2.0e-29 134.0 149 48.3
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.0e-28 129.4 101 62.4
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 6.2e-26 122.5 97 58.8
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.3e-20 104.8 75 70.7
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 3.0e-20 103.6 116 50.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 5.6e-19 99.4 70 68.6
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 4.4e-16 89.7 89 48.3
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.7e-15 87.8 80 55.0
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.6e-13 79.7 100 45.0
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 4.2e-06 56.6 51 52.9


User provided reference genes

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