Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 6.6e-108 394.0 198 100.0
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 2.1e-85 319.3 198 78.8
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 2.5e-83 312.4 193 80.3
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 1.3e-82 310.1 203 75.9
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 2.1e-82 309.3 206 74.3
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.8e-81 306.2 197 76.1
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 5.3e-81 304.7 201 77.1
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 2.6e-80 302.4 193 77.7
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 3.4e-80 302.0 195 73.3
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 4.4e-80 301.6 201 76.1
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 5.8e-80 301.2 193 75.1
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.6e-80 300.8 197 74.6
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.7e-79 299.7 199 75.9
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.8e-79 298.5 197 74.6
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 4.9e-79 298.1 200 74.0
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 3.2e-78 295.4 198 72.7
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 1.6e-77 293.1 197 74.1
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.5e-77 292.0 207 72.9
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 4.6e-77 291.6 198 71.2
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 7.9e-77 290.8 193 74.1
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.9e-76 288.5 208 70.7
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 5.1e-76 288.1 201 72.1
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 8.7e-76 287.3 208 70.7
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 8.7e-76 287.3 201 72.1
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 8.7e-76 287.3 192 74.0
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.1e-75 287.0 192 72.9
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 1.9e-75 286.2 200 73.5
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.3e-75 285.4 209 70.8
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 7.3e-75 284.3 209 70.3
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 9.6e-75 283.9 203 67.5
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.3e-74 283.5 208 74.0
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 6.2e-74 281.2 206 67.0
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 8.1e-74 280.8 207 68.6
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 8.1e-74 280.8 247 61.1
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 1.4e-73 280.0 206 66.5
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 6.9e-73 277.7 197 66.0
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 4.5e-72 275.0 212 67.0
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 7.6e-72 274.2 198 70.2
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 9.9e-72 273.9 191 72.3
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 1.7e-71 273.1 190 68.9
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.7e-71 273.1 185 71.9
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 6.4e-71 271.2 197 69.0
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.1e-70 270.4 187 67.9
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 2.4e-70 269.2 194 67.0
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.2e-70 268.9 198 64.6
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 4.2e-70 268.5 197 67.0
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.1e-69 266.2 241 59.3
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 2.7e-69 265.8 284 53.5
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.7e-69 265.8 198 68.2
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 7.9e-69 264.2 198 64.1
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.8e-68 263.1 194 67.5
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 3.9e-68 261.9 198 65.2
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 3.9e-68 261.9 194 67.0
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 3.9e-68 261.9 198 64.6
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 6.7e-68 261.2 198 66.2
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 6.7e-68 261.2 194 67.0
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 6.7e-68 261.2 189 66.1
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 6.7e-68 261.2 188 66.5
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 8.7e-68 260.8 198 66.2
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.5e-67 260.0 197 67.0
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 1.9e-67 259.6 193 67.4
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.9e-67 259.6 209 64.6
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 2.5e-67 259.2 193 67.4
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 2.5e-67 259.2 193 67.4
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 4.3e-67 258.5 190 66.3
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.3e-67 258.5 199 66.3
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 4.3e-67 258.5 215 60.0
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 5.6e-67 258.1 197 67.0
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 7.4e-67 257.7 193 66.8
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 9.6e-67 257.3 198 63.6
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 9.6e-67 257.3 206 62.6
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.3e-66 256.9 192 65.6
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.3e-66 256.9 197 64.5
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 1.3e-66 256.9 193 66.8
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 3.7e-66 255.4 198 66.7
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 1.1e-65 253.8 197 66.5
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.1e-65 253.8 195 65.6
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 2.4e-65 252.7 198 62.6
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 4.0e-65 251.9 186 66.7
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.5e-64 250.0 192 61.5
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.0e-64 249.6 191 68.1
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 4.5e-64 248.4 197 61.9
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.8e-63 245.4 153 75.8
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.9e-62 243.0 158 75.9
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.2e-62 242.3 299 48.2
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 3.2e-62 242.3 194 64.9
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 3.2e-62 242.3 190 61.6
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 5.5e-62 241.5 192 63.0
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.2e-61 240.4 200 59.0
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 6.0e-61 238.0 227 55.1
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.0e-60 237.3 202 61.4
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 3.9e-60 235.3 199 63.3
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 6.3e-58 228.0 157 73.9
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 4.1e-57 225.3 142 74.6
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 5.3e-57 224.9 187 61.5
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.5e-56 223.4 207 58.0
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 7.6e-56 221.1 186 59.7
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 2.9e-55 219.2 349 41.0
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 5.0e-55 218.4 187 59.9
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.0e-52 210.7 152 70.4
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 7.4e-51 204.5 167 64.1
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 2.6e-48 196.1 179 55.9
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.2e-46 189.1 123 77.2
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.5e-43 179.5 120 73.3
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.3e-42 177.2 195 48.2
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.1e-41 174.1 189 48.1
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.4e-41 172.9 192 45.8
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 2.9e-39 166.0 191 47.6
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 3.8e-39 165.6 109 72.5
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 5.5e-38 161.8 198 44.9
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 5.1e-36 155.2 146 52.7
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 8.8e-36 154.5 106 72.6
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 8.8e-36 154.5 111 69.4
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 8.8e-36 154.5 241 42.3
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 9.7e-35 151.0 199 45.7
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 9.4e-30 134.4 100 63.0
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.6e-27 126.3 136 53.7
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 5.7e-27 125.2 121 57.0
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 7.0e-25 118.2 75 74.7
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 3.5e-24 115.9 88 65.9
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 8.5e-23 111.3 84 64.3
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-18 96.7 87 57.5
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 6.3e-18 95.1 88 55.7
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.3e-18 95.1 87 55.2
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.1e-17 92.8 87 55.2
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 5.4e-17 92.0 147 33.3
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.6e-16 90.5 188 34.0
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.9e-14 83.6 205 33.7
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 5.5e-14 82.0 57 70.2
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 2.3e-12 76.6 56 67.9
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.0e-12 76.3 84 52.4
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.0e-12 76.3 52 69.2
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.2e-11 74.3 55 67.3
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 1.2e-11 74.3 55 67.3
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.4e-11 72.8 49 73.5
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 7.5e-11 71.6 67 61.2
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 1.3e-10 70.9 59 66.1
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 2.8e-10 69.7 107 37.4


User provided reference genes

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