Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 4.4e-127 458.0 234 100.0
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 1.4e-85 320.1 235 70.6
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.6e-84 316.6 234 72.2
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.9e-82 309.7 231 71.9
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.3e-81 307.0 233 71.7
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.4e-80 303.5 234 68.4
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 9.0e-80 300.8 234 67.5
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 2.0e-79 299.7 236 69.5
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 7.6e-79 297.7 252 65.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.9e-79 297.4 251 64.9
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.3e-78 297.0 246 65.9
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.3e-78 297.0 251 64.5
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 3.8e-78 295.4 251 64.5
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 6.4e-78 294.7 249 63.9
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 6.4e-78 294.7 235 68.1
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 8.4e-78 294.3 234 66.7
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.9e-77 293.1 234 67.9
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 3.2e-77 292.4 250 63.6
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 3.2e-77 292.4 230 67.8
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 4.2e-77 292.0 238 66.0
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 5.4e-77 291.6 235 67.7
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 9.3e-77 290.8 251 64.9
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 2.7e-76 289.3 235 66.4
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 4.6e-76 288.5 234 66.7
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 4.6e-76 288.5 236 66.5
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 6.0e-76 288.1 234 65.8
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.3e-75 287.0 237 66.2
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.3e-75 287.0 237 65.8
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.8e-75 286.6 237 65.8
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.8e-75 286.6 238 66.0
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 2.3e-75 286.2 237 65.8
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 3.9e-75 285.4 234 65.4
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 6.7e-75 284.6 223 69.1
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 8.7e-75 284.3 220 68.2
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.5e-74 283.5 236 64.8
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.9e-74 283.1 234 65.0
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 2.5e-74 282.7 231 65.8
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.3e-74 282.3 229 66.4
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.3e-73 280.4 241 64.7
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.6e-73 280.0 243 64.6
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 2.1e-73 279.6 233 65.7
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 2.8e-73 279.3 229 65.9
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.8e-73 279.3 224 68.3
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 2.8e-73 279.3 234 64.1
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 3.6e-73 278.9 235 65.5
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.4e-72 276.9 238 64.7
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 4.0e-72 275.4 230 64.3
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 5.3e-72 275.0 227 67.0
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 6.9e-72 274.6 232 63.4
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 9.0e-72 274.2 235 63.8
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.5e-71 273.5 220 66.4
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.0e-71 273.1 238 64.3
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 2.6e-71 272.7 225 64.9
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 7.6e-71 271.2 235 64.7
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.3e-70 270.4 234 64.5
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 2.2e-70 269.6 258 60.5
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.2e-70 269.6 243 63.0
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.2e-70 269.6 230 63.9
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.2e-70 269.6 234 64.1
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 3.8e-70 268.9 223 65.5
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 6.4e-70 268.1 238 63.0
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.9e-69 266.5 235 64.3
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 2.4e-69 266.2 222 65.3
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 2.4e-69 266.2 222 65.3
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 3.2e-69 265.8 235 61.3
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 5.5e-69 265.0 239 60.7
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 5.5e-69 265.0 240 60.4
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 9.3e-69 264.2 240 60.4
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.2e-68 263.8 222 66.2
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.2e-68 263.8 235 61.7
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 2.7e-68 262.7 235 60.9
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 4.6e-68 261.9 259 57.5
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 7.9e-68 261.2 229 63.8
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 1.0e-67 260.8 218 64.7
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.3e-67 260.4 208 66.3
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 6.7e-67 258.1 229 62.9
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.5e-66 256.9 218 66.5
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 2.5e-66 256.1 221 64.3
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.3e-66 255.8 208 65.9
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 4.3e-66 255.4 226 61.1
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 7.4e-66 254.6 205 69.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.3e-65 253.8 210 65.2
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 6.2e-65 251.5 221 63.8
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 8.1e-65 251.1 234 61.1
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.1e-64 250.8 205 68.3
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.4e-64 250.4 233 60.1
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 6.9e-64 248.1 202 67.8
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 5.8e-63 245.0 217 63.6
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.0e-62 244.2 157 79.6
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 6.5e-62 241.5 202 65.8
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 4.2e-61 238.8 221 62.0
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 4.2e-61 238.8 203 63.5
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 2.7e-60 236.1 205 62.9
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.1e-56 222.6 153 75.2
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 6.9e-56 221.5 198 63.1
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.8e-49 199.5 235 51.9
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 6.5e-46 188.3 236 49.2
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 7.2e-45 184.9 238 46.6
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 6.1e-44 181.8 196 54.6
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 2.0e-42 176.8 168 58.3
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.5e-39 167.2 223 50.2
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.0e-39 166.8 222 48.6
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 3.8e-38 162.5 156 57.1
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 5.0e-38 162.2 157 55.4
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 2.5e-37 159.8 216 45.8
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 9.4e-37 157.9 154 55.2
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 2.2e-33 146.7 112 65.2
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 8.2e-33 144.8 152 50.0
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.2e-30 136.7 95 70.5
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 9.4e-29 131.3 153 51.6
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.1e-21 107.8 163 45.4
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 9.4e-21 104.8 88 63.6
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 2.1e-20 103.6 114 54.4
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 8.8e-19 98.2 116 42.2
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.0e-14 84.7 154 39.0
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 2.4e-08 63.5 35 80.0
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 6.6e-06 55.5 59 50.8


User provided reference genes

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