Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 7.3e-221 770.4 426 100.0
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 3.1e-115 419.5 403 65.8
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 2.5e-96 356.7 502 44.0
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 5.2e-94 349.0 520 42.1
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 5.8e-93 345.5 547 41.3
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 8.3e-92 341.7 517 41.2
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.1e-91 341.3 544 39.3
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.4e-91 340.9 503 42.9
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.9e-91 340.5 535 40.2
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.2e-91 339.7 525 41.5
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 5.4e-91 339.0 505 42.8
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.2e-91 338.2 535 39.8
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 6.0e-90 335.5 522 41.4
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.7e-89 334.0 536 39.7
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 5.1e-89 332.4 533 39.4
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.9e-88 330.5 479 41.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 4.0e-86 322.8 567 38.3
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.4e-85 319.7 497 39.8
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.8e-85 318.9 487 41.1
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.3e-84 317.8 479 39.7
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.1e-83 314.7 502 40.0
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.4e-83 313.5 532 38.9
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 9.2e-83 311.6 505 40.0
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 3.5e-82 309.7 517 42.2
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 3.5e-82 309.7 500 40.0
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 3.5e-82 309.7 485 39.6
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.0e-81 308.1 453 42.4
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 1.7e-81 307.4 478 41.4
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 1.7e-81 307.4 478 41.4
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-81 307.4 516 38.8
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 3.0e-81 306.6 527 38.5
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 4.3e-80 302.8 495 38.4
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 7.3e-80 302.0 481 38.7
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.1e-79 300.4 500 39.4
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 3.6e-79 299.7 502 39.6
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 4.7e-79 299.3 530 37.7
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 4.7e-79 299.3 481 37.6
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 1.4e-78 297.7 534 37.3
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 1.8e-78 297.4 516 37.2
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.1e-78 296.6 501 39.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 3.1e-78 296.6 485 42.1
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 4.0e-78 296.2 481 39.3
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 5.3e-78 295.8 508 36.8
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 6.9e-78 295.4 507 38.1
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 6.9e-78 295.4 473 39.7
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 6.9e-78 295.4 483 39.8
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.2e-77 294.7 511 37.0
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.0e-77 293.9 478 40.0
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.0e-77 293.9 507 37.5
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.6e-77 293.5 481 39.1
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 3.4e-77 293.1 549 36.1
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 3.4e-77 293.1 475 39.2
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 5.8e-77 292.4 481 39.1
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 7.6e-77 292.0 495 39.0
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 7.6e-77 292.0 490 38.4
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.2e-76 290.4 514 37.9
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.2e-76 290.4 507 37.7
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.9e-76 289.3 511 36.4
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 1.4e-75 287.7 537 35.9
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 9.3e-75 285.0 548 35.6
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 3.5e-74 283.1 488 38.7
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 6.0e-74 282.3 521 37.0
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 6.0e-74 282.3 619 33.1
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.0e-73 281.6 484 39.5
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.0e-73 280.0 468 40.8
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.0e-73 280.0 503 35.6
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.5e-72 276.9 525 36.4
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 3.3e-72 276.6 536 36.4
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 4.3e-72 276.2 497 37.6
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.3e-71 274.6 272 50.7
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.3e-71 274.6 271 53.5
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 4.8e-71 272.7 252 55.2
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 8.1e-71 271.9 529 35.3
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.8e-70 270.8 528 35.0
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.8e-70 270.8 573 37.0
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.4e-70 270.4 471 37.8
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 3.1e-70 270.0 494 36.8
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 5.3e-70 269.2 479 38.0
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 6.9e-70 268.9 630 31.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 9.0e-70 268.5 491 35.2
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.2e-69 268.1 548 36.1
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.2e-69 268.1 548 36.1
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 1.2e-69 268.1 479 38.0
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 2.0e-69 267.3 479 38.0
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.6e-69 266.9 250 52.8
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 2.6e-69 266.9 484 37.8
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 4.5e-69 266.2 535 36.1
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 4.5e-69 266.2 557 35.9
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.8e-69 265.8 429 38.0
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.7e-68 264.2 532 35.5
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.8e-68 263.1 473 37.0
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 6.4e-68 262.3 480 37.1
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.2e-67 260.0 641 35.4
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 4.2e-67 259.6 507 36.1
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 4.2e-67 259.6 254 52.4
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 2.7e-66 256.9 559 35.2
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 3.5e-66 256.5 560 35.2
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 4.6e-66 256.1 534 33.7
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.0e-66 255.8 282 47.5
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.0e-65 255.0 517 34.4
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.3e-65 254.6 483 36.4
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 2.3e-65 253.8 500 35.6
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 8.7e-65 251.9 540 39.3
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.3e-64 250.0 452 36.7
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 3.3e-64 250.0 483 37.3
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.3e-63 248.1 517 37.1
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.1e-63 245.4 242 50.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 1.8e-62 244.2 439 35.5
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.4e-62 243.8 314 42.7
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 5.3e-62 242.7 476 36.8
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.4e-61 240.0 399 38.6
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.5e-59 232.6 246 47.6
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.2e-58 231.5 462 35.3
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 4.6e-58 229.6 472 35.8
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.0e-57 228.4 441 37.6
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.8e-57 227.6 485 31.8
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.9e-57 226.5 175 58.9
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.5e-56 224.6 459 37.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.9e-56 224.2 475 36.0
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 5.7e-56 222.6 457 34.8
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 6.9e-54 215.7 271 45.8
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 5.8e-53 212.6 475 35.8
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 1.6e-50 204.5 253 41.9
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 3.9e-49 199.9 482 34.2
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 9.7e-48 195.3 214 48.6
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 4.8e-47 193.0 468 37.0
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 7.4e-40 169.1 381 32.5
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.7e-37 159.1 143 57.3
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 1.0e-36 158.7 127 59.8
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.7e-36 157.9 248 34.7
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.9e-36 157.1 256 35.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.5e-35 154.1 464 28.7
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.2e-35 153.7 371 31.8
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.6e-34 151.4 403 28.8
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.0e-33 147.1 108 62.0
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.0e-32 144.4 288 34.0
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 2.0e-32 144.4 116 61.2
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 8.2e-31 139.0 390 30.3
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.6e-29 134.0 309 29.8
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.0e-28 129.8 121 52.9
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 8.5e-28 129.0 152 46.7
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 1.0e-20 105.5 422 27.5
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 2.2e-20 104.4 169 37.9
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 2.5e-19 100.9 331 30.2
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 9.4e-19 99.0 211 31.8
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.4e-17 95.1 93 55.9
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 2.8e-15 87.4 78 52.6
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.2e-11 73.6 91 50.5
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.7e-10 70.1 105 36.2
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 8.0e-10 69.3 445 24.0
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.3e-09 67.8 69 52.2
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 1.2e-08 65.5 84 46.4
Ciclev10004724m.g Citrus clementina HOM05D003335 ORTHO05D003853 3.7e-07 60.5 146 28.1
Gohir.A09G227600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 4.9e-07 60.1 157 26.8
Gorai.002G026500 Gossypium raimondii HOM05D003335 ORTHO05D003853 6.3e-07 59.7 156 27.6
Gohir.D01G023421 Gossypium hirsutum HOM05D003335 ORTHO05D003853 1.4e-06 58.5 156 26.9
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.8e-06 58.2 85 42.4
Thecc.04G263400 Theobroma cacao HOM05D003335 ORTHO05D003853 1.8e-06 58.2 146 26.7
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 2.4e-06 57.8 254 23.2
COL.COLO4_15958 Corchorus olitorius HOM05D003335 ORTHO05D003853 2.4e-06 57.8 148 27.7
MBI10_g35441_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 2.4e-06 57.8 146 26.7
TWI79G0818 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 2.4e-06 57.8 121 29.8
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 4.1e-06 57.0 63 47.6
arahy.Tifrunner.gnm1.ann1.66V9A6 Arachis hypogaea HOM05D000347 ORTHO05D001997 4.1e-06 57.0 120 30.8
Gohir.A02G042700 Gossypium hirsutum HOM05D003335 ORTHO05D003853 5.4e-06 56.6 141 27.7
Gohir.D02G048300 Gossypium hirsutum HOM05D003335 ORTHO05D003853 5.4e-06 56.6 141 27.7
Gohir.D09G228600 Gossypium hirsutum HOM05D003335 ORTHO05D003853 5.4e-06 56.6 157 25.5
Gorai.005G053600 Gossypium raimondii HOM05D003335 ORTHO05D003853 5.4e-06 56.6 141 27.7
Gorai.006G251300 Gossypium raimondii HOM05D003335 ORTHO05D003853 5.4e-06 56.6 157 25.5
Peaxi162Scf00362g00643 Petunia axillaris HOM05D000347 ORTHO05D001997 5.4e-06 56.6 54 46.3
ATR0787G209 Amborella trichopoda HOM05D003335 ORTHO05D003853 7.0e-06 56.2 148 27.0
arahy.Tifrunner.gnm1.ann1.G72707 Arachis hypogaea HOM05D000347 ORTHO05D001997 7.0e-06 56.2 150 28.7
Duzib151G0619 Durio zibethinus HOM05D003335 ORTHO05D003853 7.0e-06 56.2 146 27.4
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 7.0e-06 56.2 121 29.8
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 7.0e-06 56.2 102 31.4
Duzib052G0269 Durio zibethinus HOM05D003335 ORTHO05D003853 9.1e-06 55.8 146 26.7


User provided reference genes

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