Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc46.102 Carica papaya HOM05D000452 ORTHO05D000647 2.0e-122 442.6 243 100.0
Ciclev10007533m.g Citrus clementina HOM05D000452 ORTHO05D000647 1.4e-88 330.1 256 64.8
THA.LOC104815402 Tarenaya hassleriana HOM05D000452 ORTHO05D000647 4.6e-87 325.1 213 73.2
QL02p091578 Quercus lobata HOM05D000452 ORTHO05D000647 5.1e-86 321.6 214 72.9
Thecc.09G037200 Theobroma cacao HOM05D000452 ORTHO05D000647 5.6e-85 318.2 262 64.9
Dinv41415 Davidia involucrata HOM05D000452 ORTHO05D000647 7.4e-85 317.8 209 73.7
Duzib150G1465 Durio zibethinus HOM05D000452 ORTHO05D000647 1.6e-84 316.6 214 69.2
Gohir.A07G025000 Gossypium hirsutum HOM05D000452 ORTHO05D000647 3.7e-84 315.5 264 60.6
Gorai.001G029800 Gossypium raimondii HOM05D000452 ORTHO05D000647 3.7e-84 315.5 264 60.6
Prupe.7G253100 Prunus persica HOM05D000452 ORTHO05D000647 3.7e-84 315.5 216 70.8
CiPaw.15G179200 Carya illinoinensis HOM05D000452 ORTHO05D000647 6.2e-84 314.7 257 63.0
CsaV3_2G003480 Cucumis sativus L. HOM05D000452 ORTHO05D000647 6.2e-84 314.7 214 70.1
AT5G35180 Arabidopsis thaliana HOM05D000452 ORTHO05D000647 1.8e-83 313.2 214 71.5
Gohir.D07G028500 Gossypium hirsutum HOM05D000452 ORTHO05D000647 4.0e-83 312.0 264 60.2
MELO3C004450.2 Cucumis melo HOM05D000452 ORTHO05D000647 1.5e-82 310.1 214 70.1
Dinv43198 Davidia involucrata HOM05D000452 ORTHO05D000647 2.0e-82 309.7 211 70.6
Thhalv10003438m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 2.6e-82 309.3 214 71.0
Manes.06G040600 Manihot esculenta HOM05D000452 ORTHO05D000647 2.6e-82 309.3 257 61.5
Manes.14G140000 Manihot esculenta HOM05D000452 ORTHO05D000647 7.6e-82 307.8 248 60.9
AL7G44030 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 9.9e-82 307.4 214 70.6
MD02G1283900 Malus domestica HOM05D000452 ORTHO05D000647 9.9e-82 307.4 215 67.4
FvH4_7g03330 Fragaria vesca HOM05D000452 ORTHO05D000647 1.7e-81 306.6 216 68.5
FAN06G1990 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.7e-81 306.6 216 68.5
CANSAT11G1350 Cannabis sativa HOM05D000452 ORTHO05D000647 3.8e-81 305.4 219 67.6
FvH4_1g01530 Fragaria vesca HOM05D000452 ORTHO05D000647 4.9e-81 305.1 209 72.2
FAN28G0115 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.9e-81 305.1 209 72.2
RcHm_v2.0_Chr2g0086461 Rosa chinensis HOM05D000452 ORTHO05D000647 4.9e-81 305.1 209 71.8
FAN19G0353 Fragaria x ananassa HOM05D000452 ORTHO05D000647 6.4e-81 304.7 209 72.2
Nitab4.5_0001671g0070 Nicotiana tabacum HOM05D000452 ORTHO05D000647 8.4e-81 304.3 209 69.4
Carub.0007s3101 Capsella rubella HOM05D000452 ORTHO05D000647 1.4e-80 303.5 254 65.0
Atru.chr7.196 Acer truncatum HOM05D000452 ORTHO05D000647 1.9e-80 303.1 214 67.3
FAN10G0162 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.9e-80 303.1 216 67.6
FAN03G2109 Fragaria x ananassa HOM05D000452 ORTHO05D000647 2.5e-80 302.8 216 67.6
FAN26G2398 Fragaria x ananassa HOM05D000452 ORTHO05D000647 3.2e-80 302.4 209 71.8
Sp7g07190 Schrenkiella parvula HOM05D000452 ORTHO05D000647 3.2e-80 302.4 214 70.1
FAN01G1180 Fragaria x ananassa HOM05D000452 ORTHO05D000647 4.2e-80 302.0 216 67.6
BcaB04g18057 Brassica carinata HOM05D000452 ORTHO05D000647 5.5e-80 301.6 212 70.8
Ca_21606_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 5.5e-80 301.6 214 68.7
Ca_21629_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 5.5e-80 301.6 214 68.7
Hma1.2p1_0182F.1_g080630 Hydrangea macrophylla HOM05D000452 ORTHO05D000647 5.5e-80 301.6 217 68.2
GSVIVG01001043001 Vitis vinifera HOM05D000452 ORTHO05D000647 5.5e-80 301.6 213 68.5
FAN23G1964 Fragaria x ananassa HOM05D000452 ORTHO05D000647 7.1e-80 301.2 209 71.8
BcaC07g37673 Brassica carinata HOM05D000452 ORTHO05D000647 9.3e-80 300.8 214 70.1
arahy.Tifrunner.gnm1.ann1.G6MTT1 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.2e-79 300.4 260 61.9
arahy.Tifrunner.gnm1.ann1.P5Q0L9 Arachis hypogaea HOM05D000452 ORTHO05D000647 1.2e-79 300.4 260 61.9
CSS0047494 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 1.2e-79 300.4 214 68.2
A08p09630 Brassica napus HOM05D000452 ORTHO05D000647 1.6e-79 300.1 254 66.5
MD15G1157900 Malus domestica HOM05D000452 ORTHO05D000647 1.6e-79 300.1 212 69.8
TWI34G1684 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 1.6e-79 300.1 205 69.3
CiPaw.16G116900 Carya illinoinensis HOM05D000452 ORTHO05D000647 2.1e-79 299.7 215 68.4
SGA_v2.0_scaffold183G39856 Striga asiatica HOM05D000452 ORTHO05D000647 3.5e-79 298.9 208 67.3
Prupe.2G038700 Prunus persica HOM05D000452 ORTHO05D000647 6.0e-79 298.1 215 66.0
Sopen07g001110 Solanum pennellii HOM05D000452 ORTHO05D000647 6.0e-79 298.1 209 67.0
Solyc07g005000.3 Solanum lycopersicum HOM05D000452 ORTHO05D000647 7.9e-79 297.7 209 67.0
Psat4g034120 Pisum sativum HOM05D000452 ORTHO05D000647 1.0e-78 297.4 214 68.2
Cc06_g07340 Coffea canephora HOM05D000452 ORTHO05D000647 1.3e-78 297.0 209 68.4
Potri.018G113100 Populus trichocarpa HOM05D000452 ORTHO05D000647 1.3e-78 297.0 215 66.5
Peaxi162Scf00347g00326 Petunia axillaris HOM05D000452 ORTHO05D000647 1.8e-78 296.6 209 67.0
CARHR217280 Cardamine hirsuta HOM05D000452 ORTHO05D000647 2.3e-78 296.2 256 65.2
Glyma.17G104200 Glycine max HOM05D000452 ORTHO05D000647 3.0e-78 295.8 211 69.2
Aqoxy7G03511 Aquilegia oxysepala HOM05D000452 ORTHO05D000647 6.7e-78 294.7 218 66.5
VMungo1215G2021 Vigna mungo HOM05D000452 ORTHO05D000647 6.7e-78 294.7 211 70.1
Phvul.003G175600 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 1.1e-77 293.9 211 68.2
Sed0007575 Sechium edule HOM05D000452 ORTHO05D000647 1.5e-77 293.5 209 67.5
Glyma.13G156600 Glycine max HOM05D000452 ORTHO05D000647 1.9e-77 293.1 211 68.2
Migut.K00364 Erythranthe guttata HOM05D000452 ORTHO05D000647 2.5e-77 292.7 208 65.9
Sabra06G0144600 Salix brachista HOM05D000452 ORTHO05D000647 2.5e-77 292.7 249 59.4
CAN.G520.40 Capsicum annuum HOM05D000452 ORTHO05D000647 4.3e-77 292.0 209 66.0
TAR383G0911 Trochodendron aralioides HOM05D000452 ORTHO05D000647 4.3e-77 292.0 209 67.5
BolC8t48044H Brassica oleracea HOM05D000452 ORTHO05D000647 9.6e-77 290.8 229 65.5
HanXRQChr05g0141531 Helianthus annuus HOM05D000452 ORTHO05D000647 9.6e-77 290.8 217 66.4
Psat0s2644g0040 Pisum sativum HOM05D000452 ORTHO05D000647 1.6e-76 290.0 214 67.3
BraA08t32960Z Brassica rapa HOM05D000452 ORTHO05D000647 2.1e-76 289.7 270 62.6
Sed0003353 Sechium edule HOM05D000452 ORTHO05D000647 2.1e-76 289.7 214 65.9
ClCG11G003630 Citrullus lanatus HOM05D000452 ORTHO05D000647 3.7e-76 288.9 197 70.1
Lj4g0005431 Lotus japonicus HOM05D000452 ORTHO05D000647 4.8e-76 288.5 214 65.4
MSTRG.26311 Avicennia marina HOM05D000452 ORTHO05D000647 1.1e-75 287.3 209 65.6
Medtr4g116840 Medicago truncatula HOM05D000452 ORTHO05D000647 1.1e-75 287.3 206 68.0
Lalb_Chr12g0198541 Lupinus albus HOM05D000452 ORTHO05D000647 2.4e-75 286.2 214 65.9
Nn2g12264 Nelumbo nucifera HOM05D000452 ORTHO05D000647 4.0e-75 285.4 239 60.3
Dinv42903 Davidia involucrata HOM05D000452 ORTHO05D000647 9.0e-75 284.3 194 70.6
Nn8g39750 Nelumbo nucifera HOM05D000452 ORTHO05D000647 2.6e-74 282.7 216 63.4
TPR.G15783 Trifolium pratense HOM05D000452 ORTHO05D000647 2.6e-74 282.7 214 65.9
Oeu050463.2 Olea europaea HOM05D000452 ORTHO05D000647 3.4e-74 282.3 225 62.2
Lalb_Chr13g0301161 Lupinus albus HOM05D000452 ORTHO05D000647 4.9e-73 278.5 214 65.4
Medtr2g449780 Medicago truncatula HOM05D000452 ORTHO05D000647 6.5e-73 278.1 214 65.4
Rhsim01G0049500 Rhododendron simsii HOM05D000452 ORTHO05D000647 6.5e-73 278.1 216 66.2
Eucgr.C04062 Eucalyptus grandis HOM05D000452 ORTHO05D000647 8.4e-73 277.7 215 66.0
Lj9C710G10 Lonicera japonica HOM05D000452 ORTHO05D000647 1.4e-72 276.9 214 66.4
Lalb_Chr08g0233861 Lupinus albus HOM05D000452 ORTHO05D000647 1.4e-72 276.9 214 63.6
Lsat_1_v5_gn_8_60041 Lactuca sativa HOM05D000452 ORTHO05D000647 3.2e-72 275.8 212 63.2
DCAR_014828 Daucus carota HOM05D000452 ORTHO05D000647 7.1e-72 274.6 211 64.9
HanXRQChr10g0281641 Helianthus annuus HOM05D000452 ORTHO05D000647 9.3e-72 274.2 211 63.0
Lj6g0026902 Lotus japonicus HOM05D000452 ORTHO05D000647 1.2e-71 273.9 214 64.5
MBI14_g13651_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 1.2e-71 273.9 248 58.1
PSO063G6842 Papaver somniferum HOM05D000452 ORTHO05D000647 7.9e-71 271.2 215 60.5
Sabra18G0096200 Salix brachista HOM05D000452 ORTHO05D000647 2.3e-70 269.6 236 57.6
PSO421G0133 Papaver somniferum HOM05D000452 ORTHO05D000647 3.0e-70 269.2 215 61.4
Sc08g0004960 Simmondsia chinensis HOM05D000452 ORTHO05D000647 3.0e-70 269.2 201 67.2
Actinidia04255 Actinidia chinensis HOM05D000452 ORTHO05D000647 3.9e-70 268.9 193 66.8
Gohir.A05G049600 Gossypium hirsutum HOM05D000452 ORTHO05D000647 8.7e-70 267.7 214 59.8
Gohir.D05G051400 Gossypium hirsutum HOM05D000452 ORTHO05D000647 8.7e-70 267.7 214 59.8
Gorai.009G053100 Gossypium raimondii HOM05D000452 ORTHO05D000647 8.7e-70 267.7 214 59.8
ECA236G0118 Erigeron canadensis HOM05D000452 ORTHO05D000647 1.1e-69 267.3 212 64.2
vmacro21878 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 1.9e-69 266.5 206 67.0
ATR0629G037 Amborella trichopoda HOM05D000452 ORTHO05D000647 4.3e-69 265.4 215 60.5
EL10Ac8g18831 Beta vulgaris HOM05D000452 ORTHO05D000647 1.1e-67 260.8 215 64.7
Haze_19303 Corylus avellana HOM05D000452 ORTHO05D000647 3.1e-67 259.2 269 53.5
Nitab4.5_0000416g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.2e-66 257.3 323 44.9
Glyma.15G208700 Glycine max HOM05D000452 ORTHO05D000647 3.4e-66 255.8 214 60.3
Aa31LG9G6040 Aethionema arabicum HOM05D000452 ORTHO05D000647 3.8e-65 252.3 194 62.9
Nitab4.5_0004050g0030 Nicotiana tabacum HOM05D000452 ORTHO05D000647 5.0e-65 251.9 199 63.8
Zm00001eb041250 Zea mays HOM05D000452 ORTHO05D000647 4.2e-64 248.8 214 58.4
Phvul.009G208300 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 7.2e-64 248.1 214 56.1
Ah.14g078550 Amaranthus hybridus HOM05D000452 ORTHO05D000647 2.7e-63 246.1 203 63.1
COL.COLO4_18731 Corchorus olitorius HOM05D000452 ORTHO05D000647 3.6e-63 245.7 202 60.9
Os08g0439100 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 1.8e-62 243.4 205 59.5
RcHm_v2.0_Chr1g0325641 Rosa chinensis HOM05D000452 ORTHO05D000647 2.0e-61 240.0 181 65.2
VMungo1309G0535 Vigna mungo HOM05D000452 ORTHO05D000647 2.0e-61 240.0 214 55.6
TPR.G31931 Trifolium pratense HOM05D000452 ORTHO05D000647 1.7e-60 236.9 239 54.8
arahy.Tifrunner.gnm1.ann1.I6E49E Arachis hypogaea HOM05D000452 ORTHO05D000647 2.2e-57 226.5 216 55.6
CSS0048847 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 1.1e-56 224.2 214 56.5
HPP92_018516 Vanilla planifolia HOM05D000452 ORTHO05D000647 1.1e-56 224.2 212 50.5
SHI24351 Sapria himalayana HOM05D000452 ORTHO05D000647 3.2e-56 222.6 202 57.9
SEGI_34758 Sequoiadendron giganteum HOM05D000452 ORTHO05D000647 4.2e-56 222.2 199 52.3
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 4.7e-55 218.8 209 55.5
Lsat_1_v5_gn_7_47401 Lactuca sativa HOM05D000452 ORTHO05D000647 2.3e-54 216.5 211 55.0
HanXRQChr09g0243291 Helianthus annuus HOM05D000452 ORTHO05D000647 8.8e-54 214.5 215 52.6
unitig_736.g22222 Utricularia gibba HOM05D000452 ORTHO05D000647 6.3e-52 208.4 209 52.2
Mapoly0103s0001 Marchantia polymorpha HOM05D000452 ORTHO05D000647 5.9e-42 175.3 215 43.7
Pp3c10_12000 Physcomitrium patens HOM05D000452 ORTHO05D000647 6.8e-38 161.8 218 40.8
SHI03234 Sapria himalayana HOM05D000452 ORTHO05D000647 1.2e-37 161.0 131 61.1
SMO367G0695 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 2.6e-37 159.8 211 42.2
Pp3c6_26940 Physcomitrium patens HOM05D000452 ORTHO05D000647 2.2e-36 156.8 212 38.7
AagrBONN_evm.TU.Sc2ySwM_344.1413 Anthoceros agrestis HOM05D000452 ORTHO05D000647 1.6e-34 150.6 211 41.2
Pp3c12_9430 Physcomitrium patens HOM05D000452 ORTHO05D000647 2.7e-34 149.8 213 38.0
SMO140G0087 Selaginella moellendorffii HOM05D000452 ORTHO05D000647 2.1e-31 140.2 201 37.8
MD07G1049900 Malus domestica HOM05D000452 ORTHO05D000647 2.7e-31 139.8 76 80.3
Hund21612 Selenicereus undatus HOM05D000452 ORTHO05D000647 1.3e-28 131.0 70 82.9
Cfa020873 Carpinus fangiana HOM05D000452 ORTHO05D000647 8.3e-28 128.3 79 75.9
Pp3c3_27440 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.0e-25 121.3 213 33.3
Actinidia38354 Actinidia chinensis HOM05D000452 ORTHO05D000647 4.2e-24 115.9 82 67.1
Actinidia04253 Actinidia chinensis HOM05D000452 ORTHO05D000647 8.9e-14 81.6 41 85.4
SEGI_35613 Sequoiadendron giganteum HOM05D000452 ORTHO05D000647 1.9e-11 73.9 53 54.7
CBR_g8994 Chara braunii HOM05D000452 ORTHO05D000647 2.7e-10 70.1 83 38.6
SHI03233 Sapria himalayana HOM05D000452 ORTHO05D000647 3.5e-10 69.7 54 61.1


User provided reference genes

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