Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.1e-159 566.6 290 100.0
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.4e-74 283.9 171 84.2
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.0e-73 280.0 306 56.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.7e-70 268.9 301 54.2
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.4e-69 267.3 298 54.4
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.8e-69 266.9 305 53.4
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 7.5e-68 261.5 284 53.9
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.7e-67 260.4 294 52.0
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 8.3e-67 258.1 285 53.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.4e-66 257.3 288 54.2
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.0e-64 251.1 293 51.5
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.8e-64 249.2 301 49.8
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.5e-63 246.5 323 46.4
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.2e-62 244.2 267 52.4
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.2e-62 244.2 267 52.8
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.6e-62 243.8 267 52.4
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 8.0e-62 241.5 294 49.3
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.0e-61 241.1 314 45.2
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 6.8e-61 238.4 290 49.7
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 8.8e-61 238.0 316 45.6
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 4.4e-60 235.7 313 48.2
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.7e-60 235.3 301 47.8
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.5e-57 226.1 303 44.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.7e-56 223.8 272 47.8
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.7e-56 223.8 300 46.7
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.8e-56 222.6 301 44.9
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 8.6e-56 221.5 296 45.3
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-55 219.5 313 46.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 3.3e-55 219.5 299 45.8
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.2e-54 217.6 297 46.1
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.0e-53 214.5 297 44.8
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.3e-53 213.4 283 46.3
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 3.0e-53 213.0 302 44.7
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 4.0e-53 212.6 291 47.4
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.8e-53 211.8 312 45.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.0e-52 210.3 302 45.4
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 3.4e-52 209.5 308 42.5
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.4e-52 209.5 291 41.9
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 4.4e-52 209.1 304 42.8
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 4.4e-52 209.1 400 39.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 5.7e-52 208.8 337 43.6
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.7e-52 208.8 283 45.6
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 7.5e-52 208.4 309 44.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 7.5e-52 208.4 290 45.9
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 9.8e-52 208.0 297 46.5
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 9.8e-52 208.0 299 46.2
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.2e-51 206.8 323 41.2
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 8.3e-51 204.9 344 40.7
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.1e-50 204.5 375 40.3
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.1e-50 204.5 294 44.9
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 3.2e-50 203.0 257 49.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.0e-49 200.3 389 37.8
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 3.5e-49 199.5 297 44.4
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 7.8e-49 198.4 269 45.0
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.3e-48 197.6 346 39.3
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.6e-48 194.9 286 43.0
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 8.6e-48 194.9 286 44.4
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.5e-47 194.1 274 45.3
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.5e-47 194.1 277 45.1
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.9e-47 193.7 288 44.4
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 4.3e-47 192.6 344 36.6
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 5.6e-47 192.2 277 44.4
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 9.5e-47 191.4 299 42.5
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.2e-46 191.0 302 43.0
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.6e-46 190.7 292 45.2
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.6e-46 190.7 207 52.2
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 2.1e-46 190.3 296 43.6
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 2.8e-46 189.9 290 41.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 8.0e-46 188.3 399 36.6
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.4e-45 187.6 295 41.7
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.4e-45 187.6 309 43.4
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 4.0e-45 186.0 274 42.0
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.0e-45 186.0 277 43.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 5.2e-45 185.7 276 41.7
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 5.2e-45 185.7 276 41.7
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 5.2e-45 185.7 324 42.0
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.2e-44 184.5 300 43.3
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.2e-44 184.5 275 43.6
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.6e-44 183.3 357 35.9
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 3.4e-44 183.0 301 42.9
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 3.4e-44 183.0 288 42.4
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.4e-44 182.6 345 38.0
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-43 181.0 296 41.9
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.7e-43 180.6 345 37.4
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.7e-43 180.6 306 40.8
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.2e-43 180.3 326 39.9
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 8.3e-43 178.3 275 41.1
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.4e-42 177.6 290 40.0
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.4e-42 177.6 382 33.8
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.9e-42 177.2 249 45.8
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.4e-42 176.8 256 42.2
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.2e-42 176.4 361 35.7
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 4.1e-42 176.0 386 33.2
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 5.4e-42 175.6 337 38.3
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 5.4e-42 175.6 319 37.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 5.4e-42 175.6 349 36.4
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 7.0e-42 175.3 292 40.4
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 9.2e-42 174.9 299 40.5
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.6e-41 174.1 318 36.8
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.0e-41 173.7 382 33.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.7e-41 173.3 247 41.7
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 3.5e-41 172.9 284 40.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-40 171.0 300 41.0
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.3e-40 170.2 267 39.7
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.3e-40 170.2 267 39.7
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.0e-40 169.9 382 34.0
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 3.9e-40 169.5 246 43.1
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 8.6e-40 168.3 270 42.2
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.1e-39 167.9 348 34.8
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.5e-39 167.5 238 40.3
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.9e-39 167.2 258 41.9
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 7.3e-39 165.2 164 51.2
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 3.6e-38 162.9 349 34.1
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.7e-38 162.5 266 39.1
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.7e-38 162.5 182 51.6
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 4.7e-38 162.5 232 44.8
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 6.2e-38 162.2 224 42.9
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.2e-38 162.2 174 52.9
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 6.2e-38 162.2 264 41.3
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.1e-37 161.4 224 43.3
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.1e-37 161.4 291 39.5
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.4e-37 161.0 225 44.0
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 1.5e-36 157.5 407 30.5
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.7e-35 154.1 290 37.9
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.7e-35 154.1 239 41.0
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.7e-35 154.1 200 43.5
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.7e-35 154.1 278 36.3
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 4.9e-35 152.5 347 33.1
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 6.4e-35 152.1 213 42.7
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 5.4e-34 149.1 232 43.5
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.6e-33 147.5 222 43.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.7e-33 146.7 346 34.4
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.6e-33 146.0 267 38.2
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 6.0e-33 145.6 262 38.5
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 6.6e-32 142.1 154 48.7
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.5e-31 141.0 161 45.3
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 7.3e-31 138.7 280 35.4
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 7.3e-31 138.7 160 48.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.1e-29 133.3 181 43.6
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 6.8e-29 132.1 116 55.2
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.1e-26 122.9 285 34.4
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 5.4e-26 122.5 79 83.5
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 3.5e-25 119.8 257 38.1
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.6e-25 119.4 271 31.7
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 8.6e-24 115.2 161 41.6
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-23 113.2 123 51.2
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 4.3e-23 112.8 260 33.8
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 4.7e-22 109.4 248 30.2
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.6e-20 103.6 92 56.5
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 3.2e-18 96.7 244 30.7
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.5e-15 87.8 74 52.7
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.3e-15 85.5 78 57.7
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 8.1e-14 82.0 75 54.7
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.4e-13 81.3 141 37.6
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-11 74.7 281 29.5
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 6.4e-11 72.4 144 36.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.4e-10 71.2 103 41.7
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.2e-10 69.7 63 46.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.2e-09 68.2 55 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 5.6e-07 59.3 104 34.6
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 9.6e-07 58.5 141 34.8
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 6.2e-06 55.8 86 38.4


User provided reference genes

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