Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc443.2 Carica papaya HOM05D002747 ORTHO05D003069 1.3e-36 156.4 114 100.0
THA.LOC104801025 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 4.4e-24 114.8 106 85.8
Gorai.005G130000 Gossypium raimondii HOM05D002747 ORTHO05D003069 2.9e-23 112.1 106 83.0
Thecc.04G200800 Theobroma cacao HOM05D002747 ORTHO05D003069 4.9e-23 111.3 106 83.0
GSVIVG01020909001 Vitis vinifera HOM05D002747 ORTHO05D003069 6.4e-23 110.9 107 82.2
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 1.4e-22 109.8 106 84.0
PGR083G0467 Punica granatum HOM05D002747 ORTHO05D003069 2.4e-22 109.0 106 82.1
Duzib268G0508 Durio zibethinus HOM05D002747 ORTHO05D003069 4.2e-22 108.2 106 81.1
Sed0019212 Sechium edule HOM05D002747 ORTHO05D003069 5.4e-22 107.8 101 87.1
AT1G04850 Arabidopsis thaliana HOM05D002747 ORTHO05D003069 7.1e-22 107.5 106 84.9
Gohir.A03G094800 Gossypium hirsutum HOM05D002747 ORTHO05D003069 9.3e-22 107.1 106 81.1
AL1G14570 Arabidopsis lyrata HOM05D002747 ORTHO05D003069 1.2e-21 106.7 106 84.0
CsaV3_2G011630 Cucumis sativus L. HOM05D002747 ORTHO05D003069 1.6e-21 106.3 101 87.1
ClCG06G007890 Citrullus lanatus HOM05D002747 ORTHO05D003069 2.1e-21 105.9 101 86.1
CARHR004240 Cardamine hirsuta HOM05D002747 ORTHO05D003069 4.6e-21 104.8 94 89.4
Aa31LG1G19860 Aethionema arabicum HOM05D002747 ORTHO05D003069 6.0e-21 104.4 107 79.4
CiPaw.01G120100 Carya illinoinensis HOM05D002747 ORTHO05D003069 7.8e-21 104.0 106 83.0
Lalb_Chr13g0294891 Lupinus albus HOM05D002747 ORTHO05D003069 7.8e-21 104.0 106 84.0
THA.LOC104826121 Tarenaya hassleriana HOM05D002747 ORTHO05D003069 7.8e-21 104.0 106 81.1
Atru.chr4.1669 Acer truncatum HOM05D002747 ORTHO05D003069 1.0e-20 103.6 108 82.4
Gohir.D02G114300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 1.0e-20 103.6 106 81.1
Carub.0001s0409 Capsella rubella HOM05D002747 ORTHO05D003069 1.3e-20 103.2 106 82.1
Thhalv10007758m.g Eutrema salsugineum HOM05D002747 ORTHO05D003069 2.3e-20 102.4 106 80.2
Manes.03G146600 Manihot esculenta HOM05D002747 ORTHO05D003069 2.3e-20 102.4 106 81.1
MELO3C020440.2 Cucumis melo HOM05D002747 ORTHO05D003069 3.0e-20 102.1 101 85.1
Sp1g03690 Schrenkiella parvula HOM05D002747 ORTHO05D003069 3.0e-20 102.1 106 80.2
Lalb_Chr12g0205501 Lupinus albus HOM05D002747 ORTHO05D003069 6.6e-20 100.9 106 83.0
Ciclev10005062m.g Citrus clementina HOM05D002747 ORTHO05D003069 8.7e-20 100.5 107 79.4
Duzib151G0310 Durio zibethinus HOM05D000002 ORTHO05D000047 8.7e-20 100.5 103 80.6
Sabra16G0200100 Salix brachista HOM05D002747 ORTHO05D003069 8.7e-20 100.5 109 52.3
TAR362G0277 Trochodendron aralioides HOM05D002747 ORTHO05D003069 8.7e-20 100.5 107 82.2
COL.COLO4_20167 Corchorus olitorius HOM05D002747 ORTHO05D003069 1.1e-19 100.1 107 80.4
DCAR_024465 Daucus carota HOM05D002747 ORTHO05D003069 2.5e-19 99.0 107 80.4
BolC8t46958H Brassica oleracea HOM05D002747 ORTHO05D003069 3.3e-19 98.6 106 79.2
TWI53G0635 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 3.3e-19 98.6 106 77.4
BcaB03g13469 Brassica carinata HOM05D002747 ORTHO05D003069 4.3e-19 98.2 106 77.4
MD13G1284200 Malus domestica HOM05D002747 ORTHO05D003069 4.3e-19 98.2 106 77.4
A08p36680 Brassica napus HOM05D002747 ORTHO05D003069 5.6e-19 97.8 105 79.0
BraA08t35571Z Brassica rapa HOM05D002747 ORTHO05D003069 5.6e-19 97.8 105 79.0
C08p01530 Brassica napus HOM05D002747 ORTHO05D003069 7.3e-19 97.4 99 82.8
Cc03_g07950 Coffea canephora HOM05D002747 ORTHO05D003069 9.6e-19 97.1 108 79.6
MD04G1012000 Malus domestica HOM05D002747 ORTHO05D003069 9.6e-19 97.1 101 83.2
arahy.Tifrunner.gnm1.ann1.12L8KL Arachis hypogaea HOM05D002747 ORTHO05D003069 1.3e-18 96.7 108 80.6
arahy.Tifrunner.gnm1.ann1.AI5VH5 Arachis hypogaea HOM05D002747 ORTHO05D003069 1.3e-18 96.7 108 80.6
Psat7g074280 Pisum sativum HOM05D002747 ORTHO05D003069 1.3e-18 96.7 106 80.2
Medtr8g085380 Medicago truncatula HOM05D002747 ORTHO05D003069 1.6e-18 96.3 94 87.2
Ca_17967_v3 Cicer arietinum L. HOM05D002747 ORTHO05D003069 2.1e-18 95.9 94 87.2
PSO357G0187 Papaver somniferum HOM05D002747 ORTHO05D003069 2.1e-18 95.9 107 75.7
Nn1g07916 Nelumbo nucifera HOM05D002747 ORTHO05D003069 2.8e-18 95.5 106 77.4
Nn225s45448 Nelumbo nucifera HOM05D002747 ORTHO05D003069 2.8e-18 95.5 106 77.4
Potri.001G316400 Populus trichocarpa HOM05D002747 ORTHO05D003069 2.8e-18 95.5 109 76.1
Potri.017G056900 Populus trichocarpa HOM05D002747 ORTHO05D003069 2.8e-18 95.5 108 77.8
Prupe.1G010500 Prunus persica HOM05D002747 ORTHO05D003069 2.8e-18 95.5 100 84.0
BcaB02g06896 Brassica carinata HOM05D002747 ORTHO05D003069 4.8e-18 94.7 106 77.4
Migut.N00399 Erythranthe guttata HOM05D002747 ORTHO05D003069 4.8e-18 94.7 105 79.0
Lj3C402G3 Lonicera japonica HOM05D002747 ORTHO05D003069 4.8e-18 94.7 109 77.1
vmacro15549 Vaccinium macrocarpon HOM05D002747 ORTHO05D003069 4.8e-18 94.7 106 53.8
Lsat_1_v5_gn_1_72020 Lactuca sativa HOM05D002747 ORTHO05D002872 6.2e-18 94.4 107 77.6
BcaC07g36875 Brassica carinata HOM05D002747 ORTHO05D003069 8.1e-18 94.0 99 81.8
Lj3C408G1 Lonicera japonica HOM05D002747 ORTHO05D003069 8.1e-18 94.0 109 77.1
Hund24396 Selenicereus undatus HOM05D002747 ORTHO05D003069 8.1e-18 94.0 109 78.0
A10p03300 Brassica napus HOM05D002747 ORTHO05D003069 1.1e-17 93.6 108 78.7
HanXRQChr10g0310071 Helianthus annuus HOM05D002747 ORTHO05D003069 1.1e-17 93.6 106 77.4
Hma1.2p1_0187F.1_g082360 Hydrangea macrophylla HOM05D002747 ORTHO05D003069 1.4e-17 93.2 84 95.2
RcHm_v2.0_Chr4g0414661 Rosa chinensis HOM05D002747 ORTHO05D003069 1.4e-17 93.2 103 77.7
ECA248G3569 Erigeron canadensis HOM05D002747 ORTHO05D003069 1.8e-17 92.8 106 78.3
Glyma.05G154200 Glycine max HOM05D002747 ORTHO05D003069 2.4e-17 92.4 108 75.9
Lj4g0002017 Lotus japonicus HOM05D002747 ORTHO05D003069 2.4e-17 92.4 100 81.0
Solyc12g098420.3 Solanum lycopersicum HOM05D002747 ORTHO05D003069 2.4e-17 92.4 97 80.4
BraA10t42604Z Brassica rapa HOM05D002747 ORTHO05D003069 3.1e-17 92.0 108 77.8
Actinidia11421 Actinidia chinensis HOM05D002747 ORTHO05D003069 4.0e-17 91.7 109 77.1
Glyma.08G112000 Glycine max HOM05D002747 ORTHO05D003069 4.0e-17 91.7 108 75.9
PSO170G5398 Papaver somniferum HOM05D002747 ORTHO05D003069 5.3e-17 91.3 106 73.6
Phvul.003G290800 Phaseolus vulgaris HOM05D002747 ORTHO05D003069 5.3e-17 91.3 108 75.9
SalBow3G1633 Salvia bowleyana HOM05D002747 ORTHO05D003069 5.3e-17 91.3 113 73.5
TPR.G22613 Trifolium pratense HOM05D002747 ORTHO05D003069 5.3e-17 91.3 106 78.3
EL10Ac3g07480 Beta vulgaris HOM05D002747 ORTHO05D003069 6.9e-17 90.9 103 76.7
BcaC05g24434 Brassica carinata HOM05D002747 ORTHO05D003069 6.9e-17 90.9 108 78.7
C05p02960 Brassica napus HOM05D001191 ORTHO05D000979 6.9e-17 90.9 108 78.7
BolC5t29084H Brassica oleracea HOM05D002747 ORTHO05D003069 6.9e-17 90.9 108 78.7
FvH4_4g13780 Fragaria vesca HOM05D002747 ORTHO05D003069 6.9e-17 90.9 104 77.9
FAN12G1649 Fragaria x ananassa HOM05D002747 ORTHO05D003069 6.9e-17 90.9 104 77.9
FAN22G0083 Fragaria x ananassa HOM05D002747 ORTHO05D003069 6.9e-17 90.9 104 77.9
Nitab4.5_0000850g0120 Nicotiana tabacum HOM05D002747 ORTHO05D003069 9.0e-17 90.5 94 81.9
Os02g0504500 Oryza sativa ssp. japonica HOM05D002747 ORTHO05D003069 9.0e-17 90.5 108 77.8
CAN.G767.5 Capsicum annuum HOM05D002747 ORTHO05D003069 2.0e-16 89.4 87 88.5
Sopen12g033200 Solanum pennellii HOM05D002747 ORTHO05D003069 2.0e-16 89.4 94 80.9
MSTRG.21971 Avicennia marina HOM05D002747 ORTHO05D003069 2.6e-16 89.0 105 79.0
Peaxi162Scf00652g00122 Petunia axillaris HOM05D002747 ORTHO05D003069 2.6e-16 89.0 108 75.0
AUR62020830 Chenopodium quinoa HOM05D002747 ORTHO05D003069 3.4e-16 88.6 98 79.6
Oeu055771.1 Olea europaea HOM05D002747 ORTHO05D003069 3.4e-16 88.6 105 77.1
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 4.5e-16 88.2 103 74.8
Oeu055772.1 Olea europaea HOM05D002747 ORTHO05D003069 4.5e-16 88.2 105 77.1
QL06p025333 Quercus lobata HOM05D002747 ORTHO05D003069 4.5e-16 88.2 102 78.4
FAN23G0792 Fragaria x ananassa HOM05D002747 ORTHO05D003770 5.8e-16 87.8 107 73.8
PGSC0003DMG401004570 Solanum tuberosum HOM05D002747 ORTHO05D003069 5.8e-16 87.8 94 79.8
Aqoxy5G00020 Aquilegia oxysepala HOM05D002747 ORTHO05D003069 1.7e-15 86.3 92 82.6
AUR62018589 Chenopodium quinoa HOM05D002747 ORTHO05D003069 2.2e-15 85.9 89 84.3
Actinidia39241 Actinidia chinensis HOM05D002747 ORTHO05D003069 4.9e-15 84.7 109 73.4
Ah.13g078100 Amaranthus hybridus HOM05D002747 ORTHO05D003069 4.9e-15 84.7 106 73.6
ATR0609G128 Amborella trichopoda HOM05D002747 ORTHO05D003069 6.4e-15 84.3 106 75.5
HPP92_021423 Vanilla planifolia HOM05D002747 ORTHO05D003069 1.9e-14 82.8 115 68.7
unitig_22.g6824 Utricularia gibba HOM05D002747 ORTHO05D003069 2.4e-14 82.4 99 77.8
Cfa014907 Carpinus fangiana HOM05D002747 ORTHO05D003069 5.4e-14 81.3 44 86.4
Haze_11620 Corylus avellana HOM05D002747 ORTHO05D003069 5.4e-14 81.3 44 86.4
CSS0015960 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 7.1e-14 80.9 103 70.9
SEGI_05435 Sequoiadendron giganteum HOM05D002747 ORTHO05D003069 2.1e-13 79.3 112 67.0
Zm00001eb181030 Zea mays HOM05D002747 ORTHO05D003069 2.7e-13 79.0 110 70.9
CSS0018864 Camellia sinensis var. sinensis HOM05D002747 ORTHO05D003069 5.1e-12 74.7 44 79.5
AUR62027645 Chenopodium quinoa HOM05D001144 ORTHO05D002615 5.1e-12 74.7 44 79.5
SHI00036 Sapria himalayana HOM05D002747 ORTHO05D003069 6.7e-12 74.3 103 40.8
Pp3c2_16680 Physcomitrium patens HOM05D002747 ORTHO05D003069 3.3e-11 72.0 104 68.3
SMO172G0136 Selaginella moellendorffii HOM05D002747 ORTHO05D003069 9.6e-11 70.5 85 76.5
Mapoly0009s0066 Marchantia polymorpha HOM05D002747 ORTHO05D003069 1.3e-10 70.1 84 78.6
AUR62025816 Chenopodium quinoa HOM05D000074 ORTHO05D001293 4.8e-10 68.2 44 75.0
AagrBONN_evm.TU.Sc2ySwM_117.309 Anthoceros agrestis HOM05D002747 ORTHO05D003069 8.1e-10 67.4 95 68.4
FAN07G2519 Fragaria x ananassa HOM05D002747 ORTHO05D003069 8.1e-10 67.4 91 46.2
AUR62042257 Chenopodium quinoa HOM05D000074 ORTHO05D001293 1.4e-09 66.6 44 72.7
Peaxi162Scf00047g00439 Petunia axillaris HOM05D002747 ORTHO05D003069 9.0e-09 63.9 43 72.1
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 9.0e-09 63.9 43 72.1
A10p03240 Brassica napus HOM05D004895 ORTHO05D003385 2.0e-08 62.8 112 42.0
CDE05G0937 Ceratophyllum demersum HOM05D002747 ORTHO05D003069 1.3e-07 60.1 101 64.4
Nitab4.5_0000401g0070 Nicotiana tabacum HOM05D002747 ORTHO05D003069 4.9e-07 58.2 39 66.7
BraA10t42600Z Brassica rapa HOM05D004895 ORTHO05D003385 6.4e-07 57.8 45 73.3
CBR_g685 Chara braunii HOM05D002747 ORTHO05D003069 3.2e-06 55.5 37 67.6
Nitab4.5_0006210g0050 Nicotiana tabacum HOM05D002747 ORTHO05D003069 4.2e-06 55.1 39 64.1


User provided reference genes

Program Settings