Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 4.8e-129 464.5 239 100.0
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 4.2e-40 169.1 180 56.7
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 3.3e-37 159.5 192 52.1
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 9.0e-35 151.4 183 50.3
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 1.2e-34 151.0 195 51.8
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 2.6e-34 149.8 183 49.7
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 2.4e-32 143.3 201 49.8
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 4.2e-32 142.5 196 49.0
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 5.6e-29 132.1 191 48.7
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 3.7e-28 129.4 191 48.2
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 4.8e-28 129.0 190 48.9
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 4.8e-28 129.0 191 47.6
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.1e-27 127.9 193 47.7
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 1.8e-27 127.1 190 48.9
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 1.7e-25 120.6 197 46.7
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 2.9e-25 119.8 185 46.5
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 8.4e-25 118.2 197 44.7
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 1.1e-24 117.9 217 42.9
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 1.1e-24 117.9 185 46.5
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 7.1e-24 115.2 212 42.5
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 9.3e-24 114.8 200 42.5
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 3.5e-23 112.8 219 42.9
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 7.9e-23 111.7 207 36.2
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 5.1e-22 109.0 198 40.4
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 5.1e-22 109.0 186 44.6
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 5.1e-22 109.0 190 43.7
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 5.1e-22 109.0 192 40.1
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 8.7e-22 108.2 189 44.4
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 1.1e-21 107.8 193 43.5
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 2.5e-21 106.7 196 40.8
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 7.4e-21 105.1 198 40.4
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 1.6e-20 104.0 200 37.0
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 2.8e-20 103.2 207 35.7
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 8.2e-20 101.7 208 36.1
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 2.4e-19 100.1 206 34.5
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 2.4e-19 100.1 206 36.9
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 2.4e-19 100.1 206 34.5
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 2.4e-19 100.1 202 40.1
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 4.0e-19 99.4 198 38.4
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 9.0e-19 98.2 198 35.9
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.2e-18 97.8 186 38.2
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 1.5e-18 97.4 196 37.8
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 2.0e-18 97.1 203 36.5
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 3.4e-18 96.3 206 39.3
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 3.4e-18 96.3 181 40.3
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 4.5e-18 95.9 195 40.0
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 7.6e-18 95.1 225 36.4
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 1.3e-17 94.4 195 40.5
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 1.7e-17 94.0 191 36.6
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 1.7e-17 94.0 177 39.5
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 3.8e-17 92.8 227 32.6
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 3.8e-17 92.8 193 34.2
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 4.9e-17 92.4 218 37.2
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 8.4e-17 91.7 220 36.8
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 8.4e-17 91.7 227 35.2
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 8.4e-17 91.7 112 51.8
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 1.1e-16 91.3 191 35.6
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.1e-16 91.3 207 34.8
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 1.4e-16 90.9 203 36.9
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 1.4e-16 90.9 200 32.5
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 2.5e-16 90.1 170 35.9
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 2.5e-16 90.1 203 36.5
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 4.2e-16 89.4 190 40.0
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 5.5e-16 89.0 70 65.7
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 2.1e-15 87.0 191 34.6
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 2.1e-15 87.0 246 34.6
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 2.7e-15 86.7 209 30.1
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 6.0e-15 85.5 189 39.2
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 7.9e-15 85.1 198 35.4
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 1.8e-14 84.0 171 36.8
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 3.0e-14 83.2 172 38.4
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 3.9e-14 82.8 198 35.9
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 5.1e-14 82.4 193 34.2
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 5.1e-14 82.4 214 34.1
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.9e-13 80.5 240 32.9
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 7.4e-13 78.6 184 35.3
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.6e-12 77.4 198 33.8
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 2.8e-12 76.6 134 44.0
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 6.3e-12 75.5 196 32.7
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 6.3e-12 75.5 58 63.8
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 1.1e-11 74.7 187 34.2
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 1.8e-11 73.9 214 29.9
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 2.4e-11 73.6 207 33.3
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 2.4e-11 73.6 226 31.9
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 3.1e-11 73.2 96 45.8
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 5.3e-11 72.4 209 32.1
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 5.3e-11 72.4 188 34.6
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 6.9e-11 72.0 207 34.3
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 9.0e-11 71.6 228 31.1
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 2.6e-10 70.1 196 35.7
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 5.9e-10 68.9 180 33.3
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 1.0e-09 68.2 189 30.7
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 1.3e-09 67.8 63 61.9
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 1.7e-09 67.4 172 33.7
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 2.9e-09 66.6 182 34.1
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 2.5e-08 63.5 188 29.3
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 4.2e-08 62.8 45 68.9
Duzib133G0413 Durio zibethinus HOM05D008367 ORTHO05D010529 7.2e-08 62.0 208 30.8
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 7.2e-08 62.0 102 39.2
RcHm_v2.0_Chr6g0288121 Rosa chinensis HOM05D008367 ORTHO05D010529 9.4e-08 61.6 185 27.6
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 1.6e-07 60.8 196 29.1
Lalb_Chr10g0098881 Lupinus albus HOM05D007526 ORTHO05D009350 3.6e-07 59.7 169 37.9
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 7.9e-07 58.5 200 32.0
Lsat_1_v5_gn_3_120620 Lactuca sativa HOM05D064852 ORTHO05D009350 7.9e-07 58.5 131 35.1
MD05G1197200 Malus domestica HOM05D008367 ORTHO05D010529 7.9e-07 58.5 184 28.8
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 1.0e-06 58.2 217 28.1
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.8e-06 57.4 238 29.0
Manes.13G034100 Manihot esculenta HOM05D008367 ORTHO05D010529 3.0e-06 56.6 182 26.9
Cpa.g.sc165.10 Carica papaya HOM05D008367 ORTHO05D010529 3.9e-06 56.2 174 31.6
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 6.7e-06 55.5 209 31.6
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 6.7e-06 55.5 41 65.9


User provided reference genes

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