Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 0.0e+00 1391.7 704 100.0
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 0.0e+00 1124.0 701 81.7
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 0.0e+00 1102.4 700 80.0
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 0.0e+00 1101.3 704 79.5
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 0.0e+00 1089.7 728 77.2
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1084.7 707 77.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 0.0e+00 1082.4 680 81.6
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 0.0e+00 1079.7 698 78.7
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 2.8e-310 1068.1 698 78.7
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 2.4e-309 1065.1 698 77.9
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 4.9e-307 1057.4 701 77.2
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.2e-305 1052.7 703 75.4
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.7e-305 1051.6 703 76.1
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 6.7e-304 1047.0 701 76.6
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.6e-302 1042.3 701 76.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 4.8e-302 1040.8 703 76.5
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.5e-300 1034.2 704 75.7
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 5.8e-300 1033.9 704 75.9
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 1.3e-299 1032.7 707 74.4
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.9e-299 1030.8 708 74.7
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 6.4e-299 1030.4 708 76.7
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.4e-298 1029.2 701 73.5
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.2e-298 1027.7 706 75.9
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.3e-298 1026.5 699 74.2
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-297 1026.2 703 74.5
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 3.5e-297 1024.6 705 74.9
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.6e-297 1024.2 706 75.1
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.0e-296 1023.1 699 75.3
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.8e-296 1022.3 708 74.0
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.9e-296 1021.1 704 74.7
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.9e-295 1018.8 703 74.0
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.5e-295 1018.5 704 74.3
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.5e-295 1018.5 703 73.7
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.2e-292 1009.6 704 73.0
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.9e-291 1004.2 653 78.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.9e-291 1004.2 704 73.6
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 6.5e-291 1003.8 701 72.8
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.4e-290 1002.7 705 72.6
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.2e-290 1001.5 723 71.5
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 4.2e-290 1001.1 706 72.4
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 4.2e-290 1001.1 738 70.3
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 7.1e-290 1000.3 701 72.5
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 7.1e-290 1000.3 704 72.2
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 2.1e-289 998.8 699 73.2
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.9e-287 992.3 735 70.5
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.9e-287 992.3 706 71.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.5e-287 991.9 695 74.7
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 2.5e-287 991.9 698 72.9
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.3e-287 991.5 706 71.8
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 9.7e-287 989.9 709 71.9
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 9.7e-287 989.9 646 79.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 9.7e-287 989.9 699 71.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 6.3e-286 987.3 708 72.2
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 4.1e-285 984.6 706 71.4
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 2.0e-284 982.2 699 73.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 3.4e-284 981.5 701 72.5
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 2.2e-283 978.8 782 66.1
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 7.2e-282 973.8 699 70.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 9.3e-282 973.4 706 70.0
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.1e-281 972.2 702 71.1
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 3.6e-281 971.5 701 69.8
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 3.9e-280 968.0 702 71.2
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 6.7e-280 967.2 700 72.1
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 6.7e-280 967.2 702 70.5
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 1.1e-279 966.5 700 71.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.1e-279 966.5 702 70.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.3e-279 964.9 714 71.0
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 3.3e-279 964.9 709 70.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.7e-279 964.1 702 70.9
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 2.2e-278 962.2 700 71.4
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.8e-278 961.8 723 69.3
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.8e-278 961.8 704 70.2
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 2.8e-278 961.8 700 70.1
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 6.3e-278 960.7 702 69.8
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.4e-277 959.5 702 70.2
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.5e-276 956.1 678 73.6
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.6e-276 955.3 705 69.4
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.4e-276 954.9 702 70.7
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 4.5e-276 954.5 701 69.3
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 3.8e-275 951.4 702 68.7
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 3.8e-275 951.4 700 70.3
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.4e-274 949.5 700 70.3
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 5.5e-274 947.6 706 68.0
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.2e-273 946.4 707 70.0
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.6e-273 946.0 707 70.2
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 7.9e-273 943.7 702 69.8
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.4e-272 943.0 702 69.1
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.8e-272 942.6 722 67.6
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 5.7e-271 937.6 706 66.9
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 6.3e-270 934.1 698 69.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.4e-266 922.9 704 68.5
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 5.5e-266 921.0 682 69.8
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 3.0e-264 915.2 700 69.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 8.8e-264 913.7 701 67.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.7e-262 909.4 716 67.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.7e-262 909.4 696 67.1
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.8e-261 906.0 704 66.2
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 5.3e-261 904.4 720 66.8
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 2.2e-259 899.0 707 65.5
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.0e-259 897.9 716 64.7
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 8.5e-259 897.1 674 68.2
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 9.4e-258 893.6 714 65.0
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.2e-257 893.3 700 65.7
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 8.8e-256 887.1 704 65.1
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 8.8e-256 887.1 702 66.4
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 4.8e-254 881.3 703 66.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.7e-252 875.5 707 65.8
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 5.5e-250 867.8 641 69.4
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.2e-249 866.7 702 63.4
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.2e-248 861.3 715 64.5
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.5e-242 841.3 702 62.3
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.8e-240 834.3 705 63.1
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-238 830.1 705 63.7
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 4.5e-236 821.6 551 76.0
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 8.6e-235 817.4 615 70.9
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.9e-234 816.2 707 60.8
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.7e-233 811.6 612 70.8
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 4.9e-230 801.6 702 61.3
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 8.3e-222 774.2 649 64.9
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.2e-220 770.4 704 60.4
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.5e-215 753.4 693 57.3
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.9e-215 750.7 547 71.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.9e-214 749.2 568 69.2
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.7e-204 716.1 561 67.6
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 5.3e-200 701.8 575 64.7
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 3.9e-195 685.6 491 70.1
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 5.6e-194 681.8 710 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.9e-186 656.8 644 55.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 7.6e-183 644.8 696 51.9
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 5.5e-165 585.5 708 46.2
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.2e-147 525.8 585 52.3
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 4.5e-143 512.7 870 39.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.7e-142 510.8 337 76.0
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.4e-136 490.3 443 61.4
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.5e-111 406.8 270 75.6
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.5e-106 389.0 261 74.3
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 5.1e-94 349.7 322 59.0
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 3.6e-92 343.6 368 53.0
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 5.3e-83 313.2 496 38.7
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 5.5e-64 250.0 547 35.8
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.9e-61 241.5 288 48.6
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.5e-50 203.8 185 60.5
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.5e-49 199.9 121 78.5
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 4.3e-45 187.2 321 39.6
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-43 182.6 301 40.5
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 6.9e-43 179.9 122 74.6
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 5.0e-41 173.7 138 69.6
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 1.9e-32 145.2 127 57.5
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 9.4e-32 142.9 176 48.9
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 3.6e-31 141.0 181 46.4
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 3.0e-30 137.9 121 58.7
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 4.2e-24 117.5 322 30.7
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 5.2e-22 110.5 121 53.7
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.0e-17 96.3 86 59.3
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.2e-15 89.4 83 53.0
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 4.0e-14 84.3 46 80.4
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.2e-14 84.0 51 68.6
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.2e-14 84.0 51 68.6
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 2.0e-13 82.0 58 69.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.7e-12 79.0 61 67.2
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.3e-09 69.3 63 50.8
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.9e-09 68.2 37 89.2


User provided reference genes

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