Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 5.8e-65 250.8 127 100.0
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 8.7e-53 210.3 128 80.5
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.3e-52 208.0 130 80.0
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 7.3e-52 207.2 127 79.5
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.1e-50 203.4 128 78.1
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 1.4e-50 203.0 128 76.6
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 5.2e-50 201.1 127 77.2
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 5.2e-50 201.1 128 79.7
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 5.2e-50 201.1 128 78.1
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 6.9e-50 200.7 132 76.5
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 6.9e-50 200.7 128 79.7
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.9e-50 200.7 128 79.7
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.0e-49 199.1 128 76.6
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 78.1
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.4e-49 198.4 128 78.9
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.8e-49 197.6 128 76.6
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 9.9e-49 196.8 129 78.3
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 2.2e-48 195.7 131 77.1
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.9e-48 195.3 129 76.7
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 4.9e-48 194.5 128 76.6
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 6.4e-48 194.1 128 73.4
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.1e-47 193.4 129 73.6
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.1e-47 193.4 128 75.8
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.4e-47 193.0 128 76.6
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.9e-47 192.6 127 77.2
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 4.2e-47 191.4 128 77.3
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 7.1e-47 190.7 128 75.8
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 9.3e-47 190.3 128 76.6
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.3e-47 190.3 122 76.2
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.1e-46 189.1 128 76.6
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.1e-46 189.1 128 75.8
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 3.5e-46 188.3 128 76.6
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.5e-46 188.3 128 74.2
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.6e-46 188.0 128 75.8
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 6.0e-46 187.6 128 72.7
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.0e-45 186.8 128 75.0
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.3e-45 186.4 130 73.1
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 2.3e-45 185.7 131 72.5
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.3e-45 185.7 115 79.1
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.3e-45 185.7 115 79.1
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 3.0e-45 185.3 130 73.1
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 75.8
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 3.9e-45 184.9 131 74.0
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 5.1e-45 184.5 128 75.0
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 6.6e-45 184.1 128 73.4
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 8.7e-45 183.7 130 73.1
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 8.7e-45 183.7 128 72.7
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 8.7e-45 183.7 129 71.3
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.1e-44 183.3 130 71.5
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.5e-44 183.0 131 72.5
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 3.3e-44 181.8 130 71.5
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.3e-44 181.4 131 73.3
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.3e-44 181.4 128 74.2
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.6e-44 181.0 132 71.2
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 5.6e-44 181.0 130 75.4
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 7.3e-44 180.6 130 73.8
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 9.6e-44 180.3 133 68.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 9.6e-44 180.3 133 68.4
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 9.6e-44 180.3 128 74.2
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.6e-43 179.5 128 74.2
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.6e-43 179.5 128 74.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.6e-43 179.5 132 72.7
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.1e-43 179.1 129 71.3
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 2.8e-43 178.7 130 71.5
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 2.8e-43 178.7 132 72.0
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.8e-43 178.7 127 73.2
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 3.6e-43 178.3 127 73.2
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.6e-43 178.3 131 71.8
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 4.8e-43 177.9 124 74.2
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 4.8e-43 177.9 134 73.1
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 6.2e-43 177.6 129 72.9
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 6.2e-43 177.6 129 72.9
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 8.1e-43 177.2 134 72.4
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-42 176.8 132 69.7
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-42 176.4 128 70.3
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.4e-42 176.4 128 72.7
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.8e-42 176.0 126 70.6
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.8e-42 176.0 126 70.6
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-42 176.0 130 70.8
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.9e-42 174.1 128 68.8
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 2.0e-41 172.6 132 71.2
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 2.6e-41 172.2 114 75.4
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 2.6e-41 172.2 132 72.0
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.6e-41 172.2 126 71.4
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.4e-41 171.8 128 68.8
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 4.5e-41 171.4 132 67.4
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 4.5e-41 171.4 132 67.4
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 4.5e-41 171.4 132 67.4
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 4.5e-41 171.4 118 70.3
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.5e-41 171.4 128 68.8
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.5e-41 171.4 128 68.8
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.5e-41 171.4 128 68.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.6e-41 170.6 128 68.8
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 9.9e-41 170.2 129 73.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.3e-40 169.9 132 69.7
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.3e-40 169.9 96 87.5
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 66.4
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.3e-40 169.9 128 70.3
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.9e-40 168.7 107 77.6
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 3.8e-40 168.3 131 69.5
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 3.8e-40 168.3 135 67.4
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 8.4e-40 167.2 112 72.3
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.1e-39 166.8 107 77.6
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.4e-39 166.4 104 77.9
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.2e-39 164.9 128 70.3
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.2e-39 164.9 128 70.3
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 5.4e-39 164.5 118 72.0
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 7.1e-39 164.1 131 70.2
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.7e-38 162.2 131 69.5
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.7e-38 162.2 96 86.5
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.7e-38 162.2 128 64.1
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.5e-38 161.8 133 63.9
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.5e-38 161.8 113 69.0
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 6.0e-38 161.0 113 71.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.3e-37 159.8 131 67.9
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 8.7e-37 157.1 128 66.4
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 8.7e-37 157.1 127 67.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 8.7e-37 157.1 99 76.8
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 8.7e-37 157.1 109 72.5
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-36 156.8 128 64.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.1e-36 156.8 130 65.4
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.5e-36 156.4 102 73.5
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.5e-36 155.6 109 71.6
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 3.3e-36 155.2 109 71.6
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.6e-35 152.9 109 70.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.8e-35 152.1 107 68.2
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.2e-35 151.0 128 62.5
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 8.1e-35 150.6 129 63.6
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 2.4e-34 149.1 126 65.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 9.0e-34 147.1 100 75.0
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.5e-33 146.4 113 68.1
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 3.4e-33 145.2 114 65.8
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 7.9e-30 134.0 93 66.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.8e-29 132.9 87 77.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.8e-29 132.9 93 73.1
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 8.7e-29 130.6 109 62.4
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.1e-28 130.2 91 73.6
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.6e-28 127.9 117 62.4
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 7.4e-28 127.5 94 68.1
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.1e-26 122.1 93 67.7
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.1e-26 122.1 113 59.3
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 2.0e-25 119.4 121 56.2
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 3.4e-25 118.6 113 59.3
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 7.6e-25 117.5 69 87.0
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 3.2e-23 112.1 104 61.5
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 4.6e-22 108.2 129 56.6
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.2e-19 99.4 72 68.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.8e-19 98.2 104 50.0
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.2e-19 97.4 62 72.6
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.3e-18 94.7 89 58.4
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-16 90.5 46 97.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 5.5e-15 84.7 105 45.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.6e-14 83.2 53 71.7
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 9.7e-12 73.9 55 58.2
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 6.5e-08 61.2 79 46.8


User provided reference genes

Program Settings