Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.2e-104 383.3 198 100.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 7.4e-51 204.5 201 54.2
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 1.1e-49 200.7 201 52.7
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.1e-49 199.1 157 65.0
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 5.3e-49 198.4 146 65.1
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 2.6e-48 196.1 156 63.5
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.6e-48 196.1 199 53.8
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 3.4e-48 195.7 202 53.0
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 5.9e-48 194.9 150 64.7
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 7.7e-48 194.5 203 53.2
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 7.7e-48 194.5 149 65.1
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 1.3e-47 193.7 149 65.1
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.7e-47 193.4 154 61.7
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 1.7e-47 193.4 201 52.2
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.8e-47 192.2 139 66.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 6.5e-47 191.4 145 64.1
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 8.5e-47 191.0 202 51.5
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.4e-46 190.3 201 51.7
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.4e-46 190.3 201 51.7
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.4e-46 190.3 156 60.3
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.9e-46 189.9 137 65.7
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 3.2e-46 189.1 162 57.4
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 5.5e-46 188.3 201 51.2
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 5.5e-46 188.3 199 50.8
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 5.5e-46 188.3 201 49.8
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 7.2e-46 188.0 199 51.3
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 7.2e-46 188.0 201 50.7
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.2e-45 187.2 148 66.9
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.6e-45 186.8 152 61.8
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.6e-45 186.8 199 50.3
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.1e-45 186.4 173 53.8
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 2.7e-45 186.0 142 62.7
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 2.7e-45 186.0 154 63.0
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.7e-45 186.0 154 59.7
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.6e-45 185.7 153 61.4
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.6e-45 185.7 156 59.0
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 7.9e-45 184.5 200 51.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 7.9e-45 184.5 199 49.7
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.0e-44 184.1 152 61.2
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.8e-44 183.3 155 56.8
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.3e-44 183.0 158 58.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.0e-44 182.6 138 60.9
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.0e-44 182.6 139 64.0
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.9e-44 182.2 156 58.3
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.9e-44 182.2 200 50.5
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 3.9e-44 182.2 201 49.3
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.9e-44 182.2 145 62.1
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 6.7e-44 181.4 145 62.1
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 6.7e-44 181.4 145 62.1
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 8.8e-44 181.0 157 59.2
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.8e-44 181.0 149 60.4
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.5e-43 180.3 149 59.7
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.5e-43 179.5 156 57.7
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.5e-43 179.5 139 61.2
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 3.3e-43 179.1 149 59.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.3e-43 179.1 139 62.6
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.3e-43 179.1 139 61.2
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.3e-43 178.7 154 58.4
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.7e-43 178.3 162 53.7
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 5.7e-43 178.3 257 40.9
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 5.7e-43 178.3 138 61.6
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 5.7e-43 178.3 153 57.5
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.7e-43 178.3 153 57.5
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.7e-43 178.3 153 57.5
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 7.4e-43 177.9 146 58.9
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 7.4e-43 177.9 143 60.1
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 7.4e-43 177.9 154 57.1
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-42 177.2 204 48.0
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 2.2e-42 176.4 158 57.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 4.8e-42 175.3 149 61.7
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-41 174.1 202 49.5
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.4e-41 173.7 137 60.6
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.4e-41 173.7 200 49.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.8e-41 173.3 202 47.0
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.8e-41 173.3 203 46.3
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 4.1e-41 172.2 157 56.1
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.2e-40 170.6 150 55.3
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.5e-40 170.2 156 52.6
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.5e-40 170.2 159 52.8
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.4e-40 169.1 153 54.9
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.4e-40 169.1 125 68.0
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 7.7e-40 167.9 153 54.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.0e-39 167.5 160 53.1
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.3e-39 167.2 160 53.1
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.7e-39 166.8 157 54.1
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.7e-39 166.8 158 55.1
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.2e-39 166.4 161 54.7
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.4e-38 163.7 144 54.9
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.4e-38 163.7 154 51.9
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.4e-38 163.7 156 51.9
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.9e-38 163.3 151 54.3
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.9e-38 163.3 139 57.6
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.2e-38 162.2 148 56.1
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 7.2e-38 161.4 154 51.9
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 9.4e-38 161.0 152 54.6
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 2.1e-37 159.8 146 52.1
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.6e-37 159.1 162 53.1
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 6.1e-37 158.3 167 51.5
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 7.9e-37 157.9 167 50.3
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.3e-36 156.4 169 50.9
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 3.0e-36 156.0 193 44.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 5.1e-36 155.2 137 55.5
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 8.8e-36 154.5 159 52.8
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.5e-35 153.7 152 53.9
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 9.7e-35 151.0 153 49.7
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.3e-34 148.3 145 47.6
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 4.1e-33 145.6 145 51.7
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 5.9e-32 141.7 142 53.5
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 5.9e-32 141.7 145 51.0
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.7e-31 140.2 142 53.5
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 1.7e-31 140.2 142 53.5
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.2e-31 139.8 145 50.3
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 2.2e-31 139.8 156 50.0
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 3.8e-31 139.0 144 52.8
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 8.5e-31 137.9 162 50.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 8.5e-31 137.9 137 51.8
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 1.1e-30 137.5 142 52.8
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.5e-30 137.1 158 48.7
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.9e-30 136.7 128 57.0
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.5e-30 136.3 162 50.6
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 4.7e-29 132.1 125 54.4
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.0e-28 131.0 145 47.6
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 3.0e-28 129.4 150 49.3
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 7.5e-27 124.8 150 47.3
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.4e-25 120.6 143 48.3
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-24 117.5 137 46.0
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.0e-23 114.4 153 43.8
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 3.2e-22 109.4 130 49.2
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 8.8e-20 101.3 132 44.7
Lj6A827G49 Lonicera japonica HOM05D022640 ORTHO05D028383 2.0e-19 100.1 59 78.0
CSS0005395 Camellia sinensis var. sinensis HOM05D022640 ORTHO05D028383 4.5e-16 89.0 58 70.7
CSS0000371 Camellia sinensis var. sinensis HOM05D022640 ORTHO05D028383 7.7e-16 88.2 58 72.4
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 7.7e-16 88.2 153 38.6
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 7.2e-14 81.6 61 63.9
CSS0024562 Camellia sinensis var. sinensis HOM05D022640 ORTHO05D028383 1.2e-13 80.9 50 72.0
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.4e-12 77.4 119 40.3
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.6e-11 73.2 140 38.6
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 4.4e-11 72.4 133 33.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 2.8e-10 69.7 178 30.9
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 2.8e-10 69.7 49 63.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 4.9e-10 68.9 145 34.5
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 3.1e-09 66.2 82 40.2
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 4.1e-09 65.9 151 37.7
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 9.2e-09 64.7 130 32.3
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.7e-08 63.2 151 35.1
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 4.5e-08 62.4 137 34.3
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 5.9e-08 62.0 160 31.2
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 2.3e-07 60.1 130 32.3
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 3.8e-07 59.3 151 35.1
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.8e-07 59.3 139 32.4
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 5.0e-07 58.9 142 32.4
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 8.6e-07 58.2 142 31.7
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.1e-06 57.8 146 32.9
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.3e-06 56.2 146 32.2
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.3e-06 55.8 120 34.2
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 5.6e-06 55.5 145 31.7
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 7.3e-06 55.1 139 33.8
Medtr8g006795 Medicago truncatula HOM05D022640 ORTHO05D004779 9.5e-06 54.7 45 51.1


User provided reference genes

Program Settings