Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 6.1e-141 504.2 266 100.0
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 1.2e-27 127.9 297 32.7
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 7.7e-27 125.2 296 34.1
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 2.2e-26 123.6 255 35.7
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 2.2e-26 123.6 286 32.9
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 3.6e-24 116.3 288 34.4
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 6.1e-24 115.5 270 35.2
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 5.1e-23 112.5 273 31.9
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 8.8e-23 111.7 281 35.2
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 2.6e-22 110.2 288 35.8
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 4.4e-22 109.4 297 31.6
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 5.7e-22 109.0 155 41.9
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 7.4e-22 108.6 158 42.4
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 7.4e-22 108.6 158 42.4
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 9.7e-22 108.2 153 40.5
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 9.7e-22 108.2 299 32.4
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 6.3e-21 105.5 269 32.3
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 1.1e-20 104.8 192 34.9
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 1.1e-20 104.8 143 42.0
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 2.0e-19 100.5 268 32.8
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 4.5e-19 99.4 294 29.6
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 5.9e-19 99.0 153 39.2
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 7.7e-19 98.6 246 32.1
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 1.0e-18 98.2 271 31.4
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 1.7e-18 97.4 333 27.0
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 1.7e-18 97.4 306 29.7
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 2.2e-18 97.1 132 40.9
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 1.4e-17 94.4 338 28.4
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 1.9e-17 94.0 281 29.5
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 1.9e-17 94.0 272 33.5
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 3.2e-17 93.2 250 34.0
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 3.2e-17 93.2 289 33.2
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 1.2e-16 91.3 261 33.0
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 1.6e-16 90.9 182 33.0
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 2.7e-16 90.1 185 34.1
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 3.6e-16 89.7 153 35.9
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 4.7e-16 89.4 279 31.5
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 8.0e-16 88.6 279 30.1
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 8.0e-16 88.6 272 29.8
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 1.0e-15 88.2 194 30.9
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 1.0e-15 88.2 182 33.0
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 3.0e-15 86.7 182 32.4
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 5.2e-15 85.9 148 35.8
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 8.8e-15 85.1 120 40.0
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 1.1e-14 84.7 246 32.9
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 1.5e-14 84.3 215 31.2
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 2.6e-14 83.6 319 26.3
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 2.6e-14 83.6 261 28.7
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 3.3e-14 83.2 319 26.0
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 3.3e-14 83.2 184 32.1
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 4.4e-14 82.8 142 35.2
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 5.7e-14 82.4 276 28.6
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 7.4e-14 82.0 194 32.0
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 9.7e-14 81.6 297 30.0
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 1.3e-13 81.3 237 28.7
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 1.3e-13 81.3 158 34.2
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 4.8e-13 79.3 282 28.0
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 1.4e-12 77.8 238 30.3
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 1.4e-12 77.8 153 33.3
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 2.4e-12 77.0 274 27.7
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 3.1e-12 76.6 198 32.3
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 4.1e-12 76.3 237 30.0
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 5.3e-12 75.9 265 27.2
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 5.3e-12 75.9 265 27.2
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 7.0e-12 75.5 237 30.0
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 9.1e-12 75.1 264 26.9
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 9.1e-12 75.1 293 29.0
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.6e-11 74.3 261 28.0
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 2.0e-11 73.9 271 28.8
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 3.5e-11 73.2 259 26.3
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 5.9e-11 72.4 239 28.9
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 7.7e-11 72.0 273 28.2
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 1.3e-10 71.2 143 36.4
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 1.7e-10 70.9 85 45.9
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 8.5e-10 68.6 192 28.6
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 1.1e-09 68.2 98 37.8
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 1.5e-09 67.8 235 28.5
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 1.5e-09 67.8 102 39.2
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 1.5e-09 67.8 178 28.7
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.2e-08 64.7 146 30.8
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 2.1e-08 63.9 188 29.8
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 3.6e-08 63.2 146 37.7
C02p23110 Brassica napus HOM05D010720 ORTHO05D009355 4.7e-08 62.8 237 28.3
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 4.7e-08 62.8 100 38.0
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 8.0e-08 62.0 142 38.7
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 1.0e-07 61.6 142 38.7
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 1.0e-07 61.6 236 28.0
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 1.0e-07 61.6 229 26.6
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 1.4e-07 61.2 142 38.7
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 1.4e-07 61.2 142 38.7
BcaB05g24293 Brassica carinata HOM05D010720 ORTHO05D009355 2.3e-07 60.5 265 25.3
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 2.3e-07 60.5 147 35.4
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 2.3e-07 60.5 236 27.5
ATR0686G174 Amborella trichopoda HOM05D007857 ORTHO05D009355 6.7e-07 58.9 271 26.6
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 6.7e-07 58.9 84 42.9
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 1.2e-06 58.2 236 27.1
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 1.2e-06 58.2 236 27.1


User provided reference genes

Program Settings