Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.6e-80 302.8 154 100.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.4e-43 178.7 129 74.4
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 7.5e-43 177.6 131 74.0
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-42 176.8 130 75.4
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-42 176.8 130 75.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.3e-42 176.8 130 75.4
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 3.7e-42 175.3 130 73.8
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 6.4e-42 174.5 129 74.4
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 6.0e-40 167.9 131 70.2
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.3e-39 166.8 141 68.1
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.7e-39 166.4 130 71.5
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.3e-39 166.0 131 67.2
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 3.0e-39 165.6 131 69.5
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.1e-39 164.9 140 66.4
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 5.1e-39 164.9 143 67.8
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.6e-39 164.5 141 67.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 8.6e-39 164.1 127 70.9
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 8.6e-39 164.1 128 68.0
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.5e-38 163.3 143 66.4
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.5e-38 163.3 131 71.0
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.5e-38 163.3 127 70.1
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.9e-38 162.9 141 67.4
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.5e-38 162.5 144 64.6
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.3e-38 162.2 143 65.0
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.3e-38 162.2 130 66.9
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.3e-38 162.2 130 66.9
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.3e-38 161.8 130 66.9
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.3e-38 161.8 130 70.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.6e-38 161.4 125 71.2
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 7.3e-38 161.0 141 66.0
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 7.3e-38 161.0 136 66.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.2e-37 160.2 130 69.2
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.1e-37 159.5 143 64.3
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.8e-37 159.1 144 66.0
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 3.6e-37 158.7 143 64.3
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.6e-37 158.7 127 69.3
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 4.7e-37 158.3 130 68.5
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 4.7e-37 158.3 142 65.5
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 6.2e-37 157.9 142 69.0
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 8.1e-37 157.5 130 66.9
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.1e-36 157.1 131 64.1
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.1e-36 157.1 133 63.9
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.8e-36 156.4 125 68.8
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.3e-36 156.0 134 69.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.3e-36 156.0 134 69.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.3e-36 156.0 134 69.4
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.3e-36 156.0 122 70.5
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 4.0e-36 155.2 134 69.4
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.0e-36 155.2 134 68.7
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 5.2e-36 154.8 125 67.2
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 5.2e-36 154.8 133 67.7
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 5.2e-36 154.8 135 65.9
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 5.2e-36 154.8 131 67.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.8e-36 154.5 134 68.7
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 6.8e-36 154.5 134 64.9
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 6.8e-36 154.5 129 67.4
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 8.9e-36 154.1 130 66.9
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.9e-36 154.1 134 68.7
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 8.9e-36 154.1 130 66.9
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.2e-35 153.7 137 66.4
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.0e-35 152.9 130 66.2
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.0e-35 152.9 130 66.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.0e-35 152.9 128 69.5
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.6e-35 152.5 131 64.9
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.6e-35 152.5 131 65.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.6e-35 152.5 130 67.7
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.6e-35 152.5 128 68.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.4e-35 151.8 130 63.8
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.9e-35 150.6 126 65.9
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 9.9e-35 150.6 132 65.9
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.7e-34 149.8 124 65.3
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.2e-34 149.4 130 65.4
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 3.7e-34 148.7 130 66.9
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.4e-34 147.9 133 67.7
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 6.4e-34 147.9 133 67.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 6.4e-34 147.9 134 64.2
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.4e-33 146.7 130 65.4
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.4e-33 146.0 134 62.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.4e-33 146.0 137 65.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.4e-33 146.0 130 65.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.4e-33 146.0 130 63.8
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.4e-33 146.0 130 63.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.4e-33 144.8 124 65.3
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 5.4e-33 144.8 134 61.2
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 5.4e-33 144.8 130 64.6
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.4e-33 144.8 130 64.6
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.1e-33 144.4 134 62.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 7.1e-33 144.4 125 64.8
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 7.1e-33 144.4 135 65.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 7.1e-33 144.4 132 62.9
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-32 143.7 130 65.4
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.2e-32 143.7 133 60.2
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.6e-32 143.3 130 63.1
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.7e-32 142.5 126 61.9
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.7e-32 142.5 131 64.9
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 7.8e-32 141.0 136 63.2
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.3e-31 140.2 125 63.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 1.3e-31 140.2 128 61.7
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.7e-31 139.8 129 61.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.9e-31 138.7 125 62.4
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 5.1e-31 138.3 135 59.3
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 8.6e-31 137.5 129 65.9
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.1e-30 137.1 129 65.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.9e-30 136.3 133 57.9
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.9e-30 136.3 129 65.1
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.5e-30 136.0 134 59.7
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.5e-30 136.0 135 61.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.3e-30 135.6 128 61.7
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 4.3e-30 135.2 126 63.5
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 7.3e-30 134.4 127 65.4
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 9.6e-30 134.0 134 57.5
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.2e-29 133.7 125 60.0
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.2e-29 133.7 129 59.7
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.6e-29 133.3 131 64.1
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 2.1e-29 132.9 128 60.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 3.4e-27 125.6 124 60.5
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.4e-27 125.2 104 67.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.4e-27 125.2 115 59.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 5.8e-27 124.8 105 66.7
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-26 123.6 130 57.7
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.7e-26 123.2 125 58.4
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-26 123.2 125 58.4
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.7e-26 123.2 125 58.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.2e-26 122.9 137 58.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 8.4e-26 120.9 137 58.4
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.1e-25 120.6 88 70.5
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 7.1e-25 117.9 89 70.8
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-24 117.1 125 56.0
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.3e-23 113.6 133 54.9
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.1e-22 110.5 120 58.3
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 4.3e-22 108.6 142 52.1
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.3e-22 107.8 128 47.7
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.4e-20 103.6 98 61.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 4.0e-20 102.1 121 47.9
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 2.0e-19 99.8 76 71.1
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 5.8e-19 98.2 134 48.5
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.8e-19 98.2 79 68.4
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.6e-19 97.8 129 45.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.9e-18 95.9 133 45.9
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 4.9e-18 95.1 78 65.4
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.4e-17 91.7 127 48.0
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.7e-16 89.4 134 45.5
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 7.9e-16 87.8 123 49.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-15 87.0 123 50.4
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-14 84.0 130 46.9
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.6e-14 81.6 131 45.0
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.8e-13 79.3 126 42.1
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.0e-12 75.5 116 44.0
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.2e-11 73.9 124 41.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-11 73.6 65 63.1
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 2.0e-11 73.2 132 43.2
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.6e-11 72.8 99 50.5
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.5e-11 72.0 63 61.9
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 6.4e-10 68.2 128 37.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.2e-09 65.9 145 36.6
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 6.7e-07 58.2 159 32.7


User provided reference genes

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