Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.7e-88 329.3 168 100.0
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.3e-48 196.8 109 86.2
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.7e-48 196.4 121 80.2
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.7e-48 196.4 113 84.1
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.2e-48 196.1 113 83.2
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.2e-48 196.1 121 79.3
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.9e-48 195.7 121 78.5
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 3.8e-48 195.3 113 83.2
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.8e-48 195.3 113 84.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.8e-48 195.3 113 84.1
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 8.5e-48 194.1 121 79.3
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-47 193.4 121 78.5
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.4e-47 193.4 121 78.5
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.9e-47 193.0 121 77.7
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-47 193.0 121 78.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.5e-47 192.6 113 83.2
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.2e-47 191.8 113 79.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.2e-47 191.8 121 77.7
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 5.5e-47 191.4 113 83.2
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 7.2e-47 191.0 113 81.4
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.2e-46 190.3 121 76.9
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.2e-46 190.3 113 82.3
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.2e-46 190.3 113 81.4
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.2e-46 190.3 113 80.5
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.6e-46 189.9 113 78.8
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.1e-46 189.5 121 76.9
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.1e-46 189.5 109 83.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 2.7e-46 189.1 113 80.5
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 2.7e-46 189.1 113 80.5
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.6e-46 188.7 113 81.4
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 4.7e-46 188.3 109 84.4
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.7e-46 188.3 125 74.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 4.7e-46 188.3 109 82.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 7.9e-46 187.6 121 75.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.0e-45 187.2 109 81.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.4e-45 186.8 121 75.2
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-45 186.8 105 86.7
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.8e-45 186.4 121 74.4
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.8e-45 186.4 113 77.9
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-45 186.4 105 86.7
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.8e-45 186.4 113 80.5
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.3e-45 186.0 113 79.6
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-45 186.0 113 80.5
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.3e-45 186.0 113 79.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.3e-45 186.0 113 78.8
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 3.0e-45 185.7 113 77.0
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 3.0e-45 185.7 113 77.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.9e-45 185.3 111 80.2
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 3.9e-45 185.3 112 82.1
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 5.1e-45 184.9 121 73.6
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.1e-45 184.9 121 75.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 5.1e-45 184.9 121 75.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.1e-45 184.9 113 77.9
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.7e-45 184.5 109 81.7
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 6.7e-45 184.5 113 77.9
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.8e-45 184.1 121 74.4
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.8e-45 184.1 121 74.4
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 8.8e-45 184.1 121 71.9
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.8e-45 184.1 105 85.7
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-44 183.7 121 76.0
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-44 183.7 121 76.0
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.5e-44 183.3 113 78.8
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.5e-44 183.3 113 78.8
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.5e-44 183.3 113 76.1
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.5e-44 183.3 113 78.8
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.6e-44 182.6 132 68.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.3e-44 182.2 121 73.6
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.4e-44 181.8 113 76.1
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.4e-44 181.8 113 76.1
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.4e-44 181.0 109 78.0
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 7.4e-44 181.0 121 73.6
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 7.4e-44 181.0 113 78.8
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 9.7e-44 180.6 121 71.9
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 9.7e-44 180.6 121 71.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-43 180.3 105 80.0
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-43 180.3 105 80.0
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.7e-43 179.9 113 77.0
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.2e-43 179.5 113 75.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.8e-43 179.1 111 78.4
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.7e-43 178.7 121 71.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.7e-43 178.7 121 71.9
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.7e-43 178.7 112 76.8
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.7e-43 178.7 113 76.1
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 4.8e-43 178.3 121 72.7
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 4.8e-43 178.3 121 72.7
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 6.3e-43 177.9 121 71.9
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.3e-43 177.9 121 71.1
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.8e-42 176.4 108 75.9
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.8e-42 176.4 113 76.1
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.4e-42 176.0 108 80.6
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.1e-42 175.6 106 77.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 3.1e-42 175.6 121 71.1
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.1e-42 175.6 121 71.1
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-42 175.6 121 71.1
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-42 175.6 121 71.1
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.1e-42 175.6 121 71.1
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 3.1e-42 175.6 121 71.1
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.1e-42 175.6 108 76.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 4.1e-42 175.3 112 75.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 4.1e-42 175.3 121 71.1
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.1e-42 175.3 121 71.1
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 4.1e-42 175.3 105 80.0
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 5.3e-42 174.9 121 69.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.0e-42 174.5 113 76.1
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 9.1e-42 174.1 113 70.8
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.1e-42 174.1 104 79.8
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.1e-42 174.1 113 73.5
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.2e-41 173.7 121 70.2
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.6e-41 173.3 113 75.2
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-41 173.3 113 75.2
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-41 173.3 113 75.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-41 173.3 113 75.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-41 173.3 113 75.2
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.6e-41 173.3 121 71.9
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.0e-41 172.9 105 77.1
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 7.7e-41 171.0 113 72.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.7e-41 171.0 113 74.3
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 7.7e-41 171.0 112 71.4
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.7e-41 171.0 113 72.6
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.3e-40 170.2 112 72.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-40 170.2 112 72.3
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-40 170.2 112 72.3
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.3e-40 170.2 112 72.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.3e-40 170.2 112 72.3
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.2e-40 169.5 112 71.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.0e-40 168.3 102 80.4
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 6.5e-40 167.9 112 70.5
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 8.5e-40 167.5 104 77.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.1e-39 167.2 112 70.5
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.5e-39 166.8 113 70.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.5e-39 166.8 105 77.1
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.9e-39 166.4 108 75.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.5e-39 166.0 112 69.6
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.5e-39 166.0 112 69.6
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.5e-39 164.9 112 68.8
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 5.5e-39 164.9 109 75.2
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 7.2e-39 164.5 98 80.6
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.6e-38 163.3 121 65.3
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.6e-38 162.2 112 68.8
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.6e-38 162.2 109 74.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 6.1e-38 161.4 112 68.8
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.4e-37 160.2 112 68.8
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.0e-37 158.7 102 78.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.0e-37 158.7 102 78.4
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 5.2e-37 158.3 112 67.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.3e-36 155.6 102 76.5
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.3e-35 153.7 112 65.2
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.1e-31 140.6 109 65.1
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.0e-29 132.5 99 64.6
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.8e-29 131.3 103 61.2
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 6.3e-27 124.8 112 56.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.6e-25 120.2 95 62.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.0e-24 117.5 103 52.4
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 8.5e-24 114.4 91 57.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-22 109.8 67 76.1
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 9.2e-18 94.4 70 62.9
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 7.7e-17 91.3 90 46.7
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.5e-15 87.0 95 44.2
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 7.8e-09 64.7 79 45.6
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 3.3e-07 59.3 95 38.9


User provided reference genes

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