Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 5.0e-139 497.7 234 100.0
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 8.6e-115 417.2 215 88.8
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.1e-113 412.5 215 87.0
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 3.6e-113 411.8 215 87.9
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 6.2e-113 411.0 209 88.5
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 6.8e-112 407.5 212 84.9
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.4e-111 404.8 215 83.7
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 4.4e-111 404.8 211 87.7
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.7e-110 402.9 215 83.3
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.7e-110 402.9 217 85.3
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.2e-110 402.5 215 83.3
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 6.4e-110 401.0 213 86.4
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.1e-109 400.2 216 85.2
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.4e-109 399.8 213 85.9
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.4e-109 399.8 213 86.4
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.2e-109 398.7 213 85.9
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 4.1e-109 398.3 211 85.8
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 7.0e-109 397.5 216 83.3
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 7.0e-109 397.5 210 86.7
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 2.0e-108 396.0 213 85.9
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 4.6e-108 394.8 210 86.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.0e-107 393.7 210 86.2
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.0e-107 393.7 217 82.5
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.0e-107 393.7 217 82.9
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.7e-107 392.9 215 82.8
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 2.3e-107 392.5 209 85.6
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.9e-107 391.7 215 82.3
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 5.0e-107 391.3 218 82.6
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 8.6e-107 390.6 211 84.4
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 1.1e-106 390.2 218 83.5
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.1e-106 390.2 211 84.4
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.1e-106 390.2 217 82.0
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.9e-106 389.4 209 85.2
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.9e-106 389.4 215 81.9
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 3.3e-106 388.7 209 84.2
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 3.3e-106 388.7 211 83.9
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.3e-106 388.7 210 85.7
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 7.3e-106 387.5 207 85.5
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 3.6e-105 385.2 214 84.6
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 6.2e-105 384.4 210 84.3
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 6.2e-105 384.4 210 83.3
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 6.2e-105 384.4 217 79.3
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.1e-104 383.6 207 85.0
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.1e-104 383.6 213 79.8
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.1e-104 383.6 211 83.4
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.1e-104 383.6 214 83.2
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 1.4e-104 383.3 212 83.0
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 3.1e-104 382.1 206 85.4
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 3.1e-104 382.1 209 83.3
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 8.9e-104 380.6 216 78.2
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.2e-103 380.2 209 83.3
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.2e-103 380.2 192 88.0
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 2.0e-103 379.4 209 83.3
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 2.6e-103 379.0 192 88.0
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 3.4e-103 378.6 212 83.0
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 4.4e-103 378.3 205 84.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 5.8e-103 377.9 213 82.6
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 7.5e-103 377.5 213 79.3
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 7.5e-103 377.5 215 79.1
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 9.8e-103 377.1 215 82.3
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 2.9e-102 375.6 209 81.8
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 2.9e-102 375.6 216 81.0
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.9e-102 375.6 215 80.0
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.9e-102 375.6 213 77.5
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 3.7e-102 375.2 209 81.3
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.7e-102 375.2 215 78.6
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 4.9e-102 374.8 209 83.3
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 4.9e-102 374.8 209 83.3
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 4.9e-102 374.8 209 83.3
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 4.9e-102 374.8 197 84.3
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 4.9e-102 374.8 203 82.8
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 6.4e-102 374.4 209 82.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 8.3e-102 374.0 209 82.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 8.3e-102 374.0 209 82.8
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 8.3e-102 374.0 209 82.8
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.3e-102 374.0 213 77.9
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.1e-101 373.6 209 79.4
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.1e-101 373.6 204 82.4
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.1e-101 373.6 198 82.8
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 1.4e-101 373.2 209 82.8
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.2e-101 372.1 215 78.6
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 7.1e-101 370.9 213 78.9
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 9.2e-101 370.5 210 81.4
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.6e-100 369.8 213 79.3
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 2.1e-100 369.4 213 79.3
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.1e-100 369.4 212 77.4
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.1e-100 369.4 214 77.6
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 4.6e-100 368.2 212 78.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 4.6e-100 368.2 210 81.4
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 6.0e-100 367.9 215 78.6
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 7.8e-100 367.5 209 79.9
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.0e-99 367.1 203 81.3
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.0e-99 367.1 195 83.6
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.3e-99 366.7 212 76.4
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.7e-99 366.3 209 80.9
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.0e-99 365.5 203 80.8
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.0e-99 365.5 206 78.6
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 6.6e-99 364.4 188 87.2
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 6.6e-99 364.4 188 87.2
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.1e-98 363.6 207 78.7
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.1e-98 363.6 196 80.6
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.5e-98 363.2 205 81.0
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.5e-98 363.2 205 78.0
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.9e-98 362.8 211 79.6
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.9e-98 362.8 212 77.8
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 2.5e-98 362.5 195 81.5
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.5e-98 362.5 210 78.6
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 3.3e-98 362.1 211 74.9
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 4.3e-98 361.7 209 77.5
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 5.6e-98 361.3 210 78.1
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 1.2e-97 360.1 217 76.0
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.6e-97 359.8 195 83.1
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.6e-97 359.8 210 78.1
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.6e-97 359.8 204 77.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.1e-97 359.4 228 73.7
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 2.1e-97 359.4 206 79.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 2.8e-97 359.0 208 78.4
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 2.8e-97 359.0 211 74.9
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 4.7e-97 358.2 197 80.2
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 6.2e-97 357.8 209 75.6
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 6.2e-97 357.8 207 76.8
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 8.1e-97 357.5 207 75.8
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.1e-96 357.1 212 75.5
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.4e-96 356.7 195 81.0
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 2.3e-96 355.9 213 74.6
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-96 355.9 209 76.6
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 3.1e-96 355.5 203 78.3
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 6.8e-96 354.4 209 78.0
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.5e-95 353.2 214 73.4
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.0e-95 352.8 209 75.1
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.6e-95 352.4 192 80.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.6e-95 352.4 192 80.2
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.4e-95 351.7 189 84.1
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 5.8e-95 351.3 211 73.9
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 9.9e-95 350.5 215 72.6
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.4e-93 345.9 209 75.1
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 9.2e-93 344.0 194 78.4
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 2.3e-91 339.3 191 77.5
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 8.6e-91 337.4 188 79.3
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.3e-90 334.3 197 74.1
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.1e-89 332.8 195 75.9
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.1e-88 328.9 215 73.0
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.2e-87 327.0 188 78.2
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 8.4e-86 320.9 207 71.0
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 2.5e-82 309.3 184 74.5
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.6e-81 305.4 200 69.5
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 4.0e-80 302.0 193 67.9
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 5.3e-80 301.6 190 70.0
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.6e-79 299.3 186 68.8
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 2.9e-78 295.8 182 69.2
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.1e-74 283.9 196 65.8
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.1e-73 279.6 217 61.8
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.1e-64 249.2 177 62.7
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 3.2e-61 239.2 213 56.3
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 7.4e-58 228.0 120 81.7
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.7e-57 225.7 120 81.7
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.1e-50 204.1 179 54.2
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 6.5e-46 188.3 208 50.5
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.3e-42 176.0 96 83.3
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.1e-36 156.8 228 43.0
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 3.1e-32 142.9 90 74.4
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 6.7e-27 125.2 142 48.6
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 5.2e-19 99.0 92 55.4
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.6e-12 77.4 66 57.6


User provided reference genes

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