Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 3.3e-181 638.3 323 100.0
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 4.5e-146 521.5 323 79.6
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 4.2e-144 515.0 323 76.5
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.8e-140 502.3 323 75.9
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.3e-137 493.4 324 75.9
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 4.9e-137 491.5 324 74.7
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.5e-137 491.1 323 74.9
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 3.2e-136 488.8 323 75.2
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 9.3e-136 487.3 323 73.4
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 2.7e-135 485.7 323 73.4
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.3e-134 482.6 323 72.1
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 5.1e-134 481.5 325 72.6
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-133 480.3 323 72.1
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-133 480.3 323 72.1
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.9e-133 479.6 324 74.7
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 4.3e-133 478.4 324 73.1
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.6e-132 476.5 323 73.1
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.8e-132 475.7 324 71.9
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.2e-132 474.2 324 71.9
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.1e-131 473.8 324 71.6
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.8e-131 473.0 324 71.6
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.4e-131 472.6 330 71.5
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.1e-131 472.2 323 70.0
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.9e-131 471.1 324 71.6
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 6.9e-131 471.1 324 71.9
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.0e-130 469.5 324 71.3
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.2e-129 466.1 306 73.2
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 3.2e-128 462.2 324 68.5
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 5.5e-128 461.5 323 68.4
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 9.3e-128 460.7 327 68.8
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 9.3e-128 460.7 325 69.8
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 7.9e-127 457.6 327 70.6
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.0e-126 457.2 326 69.9
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.3e-126 456.1 323 67.2
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.7e-126 454.1 323 70.3
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.1e-125 453.8 379 60.2
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 1.9e-125 453.0 363 61.7
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.9e-125 453.0 328 66.8
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 9.7e-125 450.7 392 58.9
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.6e-124 449.9 323 66.9
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.6e-124 449.9 323 68.1
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 2.8e-124 449.1 306 70.6
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.7e-124 448.7 338 66.6
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 6.3e-124 448.0 325 68.6
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.4e-123 446.8 325 70.2
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 4.1e-123 445.3 323 69.7
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.2e-122 443.7 323 69.7
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 1.5e-122 443.4 324 66.4
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 5.9e-122 441.4 324 66.0
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 5.9e-122 441.4 323 65.0
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.7e-121 439.9 323 65.6
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 8.5e-121 437.6 326 66.9
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.1e-120 437.2 323 68.4
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 5.5e-120 434.9 323 65.0
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 5.5e-120 434.9 323 64.4
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-119 433.0 338 64.8
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.4e-118 430.3 326 68.7
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 3.0e-118 429.1 341 65.1
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 6.7e-118 427.9 324 63.3
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.1e-117 427.2 324 67.0
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 2.0e-117 426.4 323 67.5
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.4e-117 425.2 323 67.2
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 5.7e-117 424.9 323 62.5
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 7.4e-117 424.5 324 64.2
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.3e-116 423.7 324 65.1
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.7e-116 423.3 326 67.5
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.7e-116 423.3 323 63.2
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 6.3e-116 421.4 323 63.5
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.4e-115 420.2 323 62.5
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.4e-115 419.5 324 64.2
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 9.1e-115 417.5 323 62.8
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.5e-114 416.8 323 62.5
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 5.9e-114 414.8 323 64.1
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.0e-113 414.1 333 63.7
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 3.8e-113 412.1 323 65.9
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.4e-112 410.2 323 61.6
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.9e-112 409.8 324 64.2
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.9e-112 409.8 333 62.8
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.5e-112 409.5 323 65.0
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 9.4e-112 407.5 323 64.4
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 9.4e-112 407.5 323 64.4
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.2e-111 407.1 326 62.9
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 4.7e-111 405.2 349 59.6
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 4.7e-111 405.2 323 63.5
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 7.9e-111 404.4 324 61.7
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 7.9e-111 404.4 308 64.0
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.2e-110 401.7 314 65.3
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-109 399.8 359 59.1
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.0e-109 399.8 364 57.1
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.8e-108 396.0 308 65.9
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 3.7e-108 395.6 327 60.6
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.8e-107 393.3 326 61.7
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 4.5e-106 388.7 362 56.9
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.7e-106 387.9 296 68.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.0e-105 387.5 323 62.8
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.9e-105 386.0 326 59.5
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.5e-104 382.9 370 56.5
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.8e-102 376.7 326 60.7
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 5.2e-102 375.2 325 60.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 5.2e-102 375.2 326 60.4
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 7.5e-101 371.3 323 61.6
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.3e-100 370.5 326 58.0
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.7e-100 370.2 326 56.7
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.1e-99 365.9 285 67.0
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.0e-99 364.8 327 59.0
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 2.5e-96 356.3 249 69.1
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.6e-95 353.6 362 51.4
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.1e-95 353.2 329 51.7
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 6.1e-95 351.7 324 54.0
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.4e-94 350.5 346 51.7
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 4.0e-94 349.0 323 52.3
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.8e-94 347.8 268 63.4
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.8e-92 342.8 234 70.1
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.8e-91 340.1 276 60.9
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-89 334.3 301 59.5
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.3e-80 302.8 325 54.5
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.4e-77 292.4 294 56.1
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 7.0e-75 285.0 308 50.6
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.5e-74 282.7 324 50.9
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.5e-72 277.3 210 69.0
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 2.5e-72 276.6 261 55.2
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 7.3e-72 275.0 212 67.9
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 1.8e-70 270.4 291 51.2
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.5e-69 267.3 323 44.0
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.2e-68 263.5 171 74.9
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.7e-68 262.7 247 53.4
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 6.6e-65 251.9 323 45.8
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.9e-60 236.5 174 66.7
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 4.9e-60 235.7 145 80.7
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 7.8e-58 228.4 165 68.5
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 8.1e-55 218.4 151 65.6
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.4e-53 212.6 164 67.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 8.4e-52 208.4 257 45.5
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 8.4e-52 208.4 145 71.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 2.5e-48 196.8 157 62.4
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 3.4e-45 186.4 127 66.1
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.0e-41 174.9 315 36.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 5.1e-41 172.6 317 34.7
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.1e-38 164.9 153 54.9
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.1e-35 154.8 222 36.5
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 7.1e-35 152.1 121 60.3
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.0e-33 148.3 217 35.9
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.4e-30 137.1 316 30.4
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 9.9e-29 131.7 84 75.0
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 4.9e-28 129.4 119 51.3
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 9.3e-27 125.2 120 52.5
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.5e-24 117.9 96 63.5
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.0e-22 109.8 120 52.5
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 4.9e-20 102.8 73 61.6
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 6.5e-20 102.4 84 65.5
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-19 101.7 73 61.6
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-19 101.7 73 61.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.1e-18 97.4 66 68.2
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 7.9e-18 95.5 76 60.5
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 8.7e-17 92.0 61 75.4
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 8.7e-17 92.0 108 43.5
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 2.4e-14 84.0 58 72.4
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 8.5e-12 75.5 61 63.9
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 6.1e-10 69.3 62 59.7
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 1.4e-06 58.2 37 64.9
Gohir.A11G267601 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.4e-06 57.4 42 57.1


User provided reference genes

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