Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 3.4e-70 268.1 125 100.0
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 3.4e-70 268.1 125 100.0
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 4.5e-46 188.0 116 81.0
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 1.3e-45 186.4 115 80.0
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 5.0e-45 184.5 115 79.1
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 5.0e-45 184.5 115 80.0
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 6.5e-45 184.1 115 78.3
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 6.5e-45 184.1 115 79.1
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 6.5e-45 184.1 115 78.3
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 1.5e-44 183.0 115 79.1
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 3.2e-44 181.8 115 78.3
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 4.2e-44 181.4 115 77.4
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 4.2e-44 181.4 115 78.3
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 5.5e-44 181.0 115 78.3
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 7.2e-44 180.6 115 77.4
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 9.4e-44 180.3 115 77.4
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 9.4e-44 180.3 115 76.5
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 1.2e-43 179.9 115 76.5
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 1.2e-43 179.9 115 77.4
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 1.2e-43 179.9 115 76.5
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 1.2e-43 179.9 110 78.2
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 1.2e-43 179.9 110 78.2
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 1.6e-43 179.5 115 78.3
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 1.6e-43 179.5 115 78.3
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 1.6e-43 179.5 115 76.5
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.6e-43 179.5 115 77.4
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 1.6e-43 179.5 115 76.5
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 2.1e-43 179.1 115 78.3
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 2.1e-43 179.1 115 78.3
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 2.1e-43 179.1 115 76.5
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 2.1e-43 179.1 115 77.4
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 2.1e-43 179.1 115 77.4
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 2.7e-43 178.7 115 75.7
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 2.7e-43 178.7 115 75.7
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 2.7e-43 178.7 115 76.5
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 2.7e-43 178.7 115 76.5
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 4.7e-43 177.9 115 76.5
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 4.7e-43 177.9 132 69.7
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 4.7e-43 177.9 115 76.5
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 4.7e-43 177.9 115 76.5
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 6.1e-43 177.6 115 77.4
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 6.1e-43 177.6 115 76.5
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 6.1e-43 177.6 115 76.5
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 6.1e-43 177.6 115 75.7
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 8.0e-43 177.2 115 76.5
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 8.0e-43 177.2 115 76.5
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 8.0e-43 177.2 115 75.7
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 8.0e-43 177.2 115 75.7
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 8.0e-43 177.2 115 76.5
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 8.0e-43 177.2 116 75.9
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 1.0e-42 176.8 115 74.8
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 1.0e-42 176.8 110 80.0
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 1.0e-42 176.8 115 75.7
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 1.0e-42 176.8 115 76.5
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 1.4e-42 176.4 115 77.4
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 1.4e-42 176.4 115 75.7
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 1.8e-42 176.0 115 76.5
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 1.8e-42 176.0 115 75.7
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 2.3e-42 175.6 115 76.5
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 2.3e-42 175.6 115 75.7
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 3.0e-42 175.3 115 73.9
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 3.0e-42 175.3 115 76.5
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 3.0e-42 175.3 115 74.8
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 4.0e-42 174.9 115 75.7
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 4.0e-42 174.9 110 78.2
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 4.0e-42 174.9 115 76.5
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 5.2e-42 174.5 115 74.8
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 6.8e-42 174.1 115 75.7
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 6.8e-42 174.1 115 75.7
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 6.8e-42 174.1 115 75.7
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 6.8e-42 174.1 115 73.0
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 8.8e-42 173.7 110 77.3
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 8.8e-42 173.7 116 71.6
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 1.2e-41 173.3 115 73.0
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 1.5e-41 172.9 115 73.9
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 2.0e-41 172.6 115 75.7
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 2.6e-41 172.2 110 77.3
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 2.6e-41 172.2 115 71.3
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 2.6e-41 172.2 115 75.7
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 3.4e-41 171.8 115 72.2
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 4.4e-41 171.4 115 72.2
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 4.4e-41 171.4 115 73.0
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 5.7e-41 171.0 116 69.8
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 7.5e-41 170.6 115 73.0
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 7.5e-41 170.6 115 73.9
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 1.3e-40 169.9 115 72.2
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 1.7e-40 169.5 116 75.0
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 1.7e-40 169.5 116 75.0
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 4.8e-40 167.9 96 81.2
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 8.3e-40 167.2 110 73.6
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 1.1e-39 166.8 119 71.4
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 1.8e-39 166.0 113 69.9
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 3.1e-39 165.2 115 70.4
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 3.1e-39 165.2 115 70.4
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 5.4e-39 164.5 141 63.1
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 2.0e-38 162.5 115 69.6
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 1.0e-37 160.2 93 79.6
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 1.7e-37 159.5 93 77.4
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 8.6e-37 157.1 110 70.0
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 1.9e-36 156.0 115 67.0
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 7.2e-36 154.1 115 63.5
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 1.2e-35 153.3 109 68.8
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 2.8e-35 152.1 115 64.3
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 6.8e-34 147.5 113 64.6
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 4.4e-33 144.8 115 60.9
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 1.0e-29 133.7 108 59.3
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 2.5e-28 129.0 114 56.1
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 1.9e-20 102.8 56 82.1
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 3.5e-14 82.0 46 80.4
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 1.2e-11 73.6 61 63.9
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 2.8e-11 72.4 112 37.5
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 6.8e-10 67.8 106 33.0
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 1.2e-09 67.0 37 78.4
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 1.1e-07 60.5 86 31.4
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 4.1e-07 58.5 33 75.8


User provided reference genes

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