Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 1.6e-42 175.6 87 100.0
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 4.7e-18 94.4 85 57.6
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 3.1e-17 91.7 95 60.0
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 2.6e-16 88.6 91 54.9
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 9.9e-16 86.7 93 57.0
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 1.3e-15 86.3 94 52.1
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 4.9e-15 84.3 97 56.7
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 8.4e-15 83.6 95 54.7
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 1.4e-14 82.8 94 52.1
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 1.4e-14 82.8 92 54.3
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 1.4e-14 82.8 92 54.3
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 2.4e-14 82.0 95 50.5
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 2.4e-14 82.0 95 50.5
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 5.4e-14 80.9 88 54.5
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 9.2e-14 80.1 94 57.4
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 9.2e-14 80.1 90 48.9
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 9.2e-14 80.1 92 51.1
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.7e-13 78.6 88 51.1
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 7.8e-13 77.0 85 56.5
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 7.8e-13 77.0 85 56.5
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 7.8e-13 77.0 90 53.3
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 1.3e-12 76.3 89 56.2
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 1.3e-12 76.3 95 53.7
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 1.7e-12 75.9 88 55.7
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 2.3e-12 75.5 91 48.4
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 3.0e-12 75.1 92 51.1
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 3.0e-12 75.1 88 52.3
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 3.9e-12 74.7 96 47.9
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 3.9e-12 74.7 95 47.4
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 6.6e-12 73.9 85 55.3
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 6.6e-12 73.9 85 52.9
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.1e-11 73.2 92 51.1
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 1.5e-11 72.8 94 47.9
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 1.9e-11 72.4 102 49.0
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 3.3e-11 71.6 85 51.8
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 3.3e-11 71.6 85 51.8
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 5.6e-11 70.9 91 49.5
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 7.3e-11 70.5 90 50.0
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 9.6e-11 70.1 94 51.1
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 9.6e-11 70.1 85 55.3
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 9.6e-11 70.1 85 55.3
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.6e-10 69.3 85 55.3
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 2.8e-10 68.6 93 49.5
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 3.6e-10 68.2 89 46.1
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 4.8e-10 67.8 99 44.4
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 4.8e-10 67.8 86 53.5
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 4.8e-10 67.8 87 49.4
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 4.8e-10 67.8 32 84.4
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 4.8e-10 67.8 79 51.9
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 6.2e-10 67.4 90 46.7
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 1.1e-09 66.6 83 50.6
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.4e-09 66.2 94 44.7
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 1.4e-09 66.2 94 47.9
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 3.1e-09 65.1 86 47.7
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 3.1e-09 65.1 85 50.6
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 5.3e-09 64.3 80 52.5
THA.LOC104821419 Tarenaya hassleriana HOM05D012999 ORTHO05D007770 6.9e-09 63.9 97 44.3
Aqoxy3G03422 Aquilegia oxysepala HOM05D007106 ORTHO05D007770 1.5e-08 62.8 95 43.2
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 1.5e-08 62.8 85 50.6
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 2.0e-08 62.4 85 47.1
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 3.4e-08 61.6 90 48.9
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 3.4e-08 61.6 96 47.9
Carub.0005s1360 Capsella rubella HOM05D012999 ORTHO05D007770 5.8e-08 60.8 89 49.4
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 7.6e-08 60.5 77 48.1
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 9.9e-08 60.1 92 42.4
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 9.9e-08 60.1 84 47.6
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.7e-07 59.3 77 49.4
Migut.I00186 Erythranthe guttata HOM05D007106 ORTHO05D007770 2.2e-07 58.9 39 66.7
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 2.9e-07 58.5 77 44.2
BcaC01g01809 Brassica carinata HOM05D012999 ORTHO05D007770 3.8e-07 58.2 45 64.4
A06p20110 Brassica napus HOM05D012999 ORTHO05D007770 3.8e-07 58.2 45 64.4
C03p71690 Brassica napus HOM05D012999 ORTHO05D007770 3.8e-07 58.2 45 64.4
BolC3t19461H Brassica oleracea HOM05D012999 ORTHO05D007770 3.8e-07 58.2 45 64.4
BraA06t25097Z Brassica rapa HOM05D012999 ORTHO05D007770 3.8e-07 58.2 45 64.4
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 6.4e-07 57.4 85 48.2
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 8.4e-07 57.0 72 47.2
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 1.1e-06 56.6 96 40.6
Thhalv10010864m.g Eutrema salsugineum HOM05D012999 ORTHO05D007770 1.1e-06 56.6 88 45.5
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 1.4e-06 56.2 90 45.6
Sp5g14370 Schrenkiella parvula HOM05D012999 ORTHO05D007770 1.4e-06 56.2 87 47.1
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 2.4e-06 55.5 84 44.0
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 2.4e-06 55.5 60 51.7
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 2.4e-06 55.5 88 44.3
TAR371G0193 Trochodendron aralioides HOM05D007106 ORTHO05D007770 3.2e-06 55.1 85 42.4
BcaB01g00910 Brassica carinata HOM05D012999 ORTHO05D007770 4.2e-06 54.7 87 44.8
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 4.2e-06 54.7 82 41.5
AL5G26740 Arabidopsis lyrata HOM05D012999 ORTHO05D007770 7.1e-06 53.9 90 46.7
Haze_07318 Corylus avellana HOM05D007106 ORTHO05D007770 7.1e-06 53.9 35 68.6
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 9.3e-06 53.5 88 39.8


User provided reference genes

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