Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.69 Carica papaya HOM05D003662 ORTHO05D001824 0.0e+00 1399.4 697 100.0
Ciclev10027956m.g Citrus clementina HOM05D003662 ORTHO05D001824 2.5e-130 470.3 540 50.2
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 5.3e-128 462.6 548 48.4
Haze_10685 Corylus avellana HOM05D003662 ORTHO05D001824 2.5e-125 453.8 588 47.3
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 3.6e-124 449.9 531 48.8
Dinv09038 Davidia involucrata HOM05D003662 ORTHO05D001824 8.8e-123 445.3 580 46.7
Gorai.008G015300 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.0e-122 444.1 548 47.4
Gohir.D12G015200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 3.3e-122 443.4 548 47.4
Dinv24197 Davidia involucrata HOM05D003662 ORTHO05D001824 2.8e-121 440.3 561 46.5
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 9.1e-120 435.3 541 45.7
Thecc.02G139400 Theobroma cacao HOM05D003662 ORTHO05D001824 1.5e-119 434.5 547 46.4
Gohir.A12G014800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 3.4e-119 433.3 548 46.5
Duzib132G0110 Durio zibethinus HOM05D003662 ORTHO05D001824 8.5e-118 428.7 547 46.8
Gohir.D13G054800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.2e-117 425.6 544 46.1
Gorai.013G061600 Gossypium raimondii HOM05D003662 ORTHO05D001824 1.6e-116 424.5 544 46.0
Potri.001G205800 Populus trichocarpa HOM05D003662 ORTHO05D001824 2.7e-116 423.7 559 46.3
Atru.chr6.854 Acer truncatum HOM05D003662 ORTHO05D001824 3.6e-116 423.3 474 51.3
Atru.chr6.858 Acer truncatum HOM05D003662 ORTHO05D001824 3.6e-116 423.3 474 51.3
Prupe.8G062200 Prunus persica HOM05D003662 ORTHO05D001824 4.4e-114 416.4 550 46.5
QL11p020558 Quercus lobata HOM05D003662 ORTHO05D001824 1.1e-112 411.8 553 48.3
CiPaw.05G036400 Carya illinoinensis HOM05D003662 ORTHO05D001824 1.2e-111 408.3 551 45.4
Manes.06G010600 Manihot esculenta HOM05D003662 ORTHO05D001824 1.2e-111 408.3 553 45.2
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 3.5e-111 406.8 529 43.7
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 1.6e-108 397.9 551 42.3
Hma1.2p1_0704F.1_g206720 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 1.1e-104 385.2 560 44.6
Sabra01G0157900 Salix brachista HOM05D003662 ORTHO05D001824 1.7e-102 377.9 554 43.0
Gohir.A13G066800 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.2e-101 372.5 545 42.9
PGR042G2509 Punica granatum HOM05D003662 ORTHO05D001824 8.0e-100 369.0 563 43.5
TAR381G1495 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.8e-99 367.9 564 43.6
Manes.14G166300 Manihot esculenta HOM05D003662 ORTHO05D001824 7.5e-98 362.5 494 45.5
TAR628G0445 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.8e-96 357.8 560 42.5
Gohir.A13G066101 Gossypium hirsutum HOM05D003662 ORTHO05D001824 7.0e-96 355.9 533 42.0
TAR376G0165 Trochodendron aralioides HOM05D003662 ORTHO05D001824 1.6e-95 354.8 585 41.9
Actinidia00263 Actinidia chinensis HOM05D003662 ORTHO05D001824 2.3e-94 350.9 539 42.7
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 2.3e-91 340.9 579 40.1
Lj5A240T38 Lonicera japonica HOM05D003662 ORTHO05D001824 1.2e-87 328.6 554 38.4
THA.LOC104799974 Tarenaya hassleriana HOM05D003662 ORTHO05D001824 1.5e-82 311.6 541 38.4
Cfa005607 Carpinus fangiana HOM05D003662 ORTHO05D001824 2.6e-82 310.8 530 40.4
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 2.0e-79 301.2 543 38.9
Eucgr.G00771 Eucalyptus grandis HOM05D003662 ORTHO05D001824 6.0e-79 299.7 557 39.3
Lj9A354G33 Lonicera japonica HOM05D003662 ORTHO05D001824 6.6e-78 296.2 549 35.5
Rhsim11G0136400 Rhododendron simsii HOM05D003662 ORTHO05D001824 1.9e-77 294.7 555 38.4
TWI14G0069 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 1.9e-77 294.7 536 37.3
Sc08g0003380 Simmondsia chinensis HOM05D003662 ORTHO05D001824 3.3e-77 293.9 559 36.9
VMungo0540G1102 Vigna mungo HOM05D003662 ORTHO05D001824 4.3e-77 293.5 585 37.9
Cc02_g21620 Coffea canephora HOM05D003662 ORTHO05D001824 7.3e-77 292.7 581 38.2
GSVIVG01003080001 Vitis vinifera HOM05D003662 ORTHO05D001824 2.8e-76 290.8 342 48.5
Phvul.006G206900 Phaseolus vulgaris HOM05D003662 ORTHO05D001824 4.4e-74 283.5 549 37.3
vmacro01822 Vaccinium macrocarpon HOM05D003662 ORTHO05D001824 3.7e-73 280.4 571 37.0
MBI02_g08727_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 2.3e-70 271.2 560 37.7
Hma1.2p1_0522F.1_g171610 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 1.9e-69 268.1 582 35.9
TPR.G13626 Trifolium pratense HOM05D003662 ORTHO05D001824 5.6e-69 266.5 542 36.0
arahy.Tifrunner.gnm1.ann1.TKBB16 Arachis hypogaea HOM05D003662 ORTHO05D001824 2.1e-68 264.6 550 36.2
EL10Ac9g21467 Beta vulgaris HOM05D003662 ORTHO05D001824 2.8e-68 264.2 557 37.0
CAN.G523.76 Capsicum annuum HOM05D003662 ORTHO05D001824 4.7e-68 263.5 576 35.6
PGSC0003DMG400012562 Solanum tuberosum HOM05D003662 ORTHO05D001824 2.6e-66 257.7 574 35.4
Hund06389 Selenicereus undatus HOM05D003662 ORTHO05D001824 9.9e-66 255.8 556 37.6
Solyc01g105120.4 Solanum lycopersicum HOM05D003662 ORTHO05D001824 8.3e-65 252.7 575 35.5
Peaxi162Scf00001g00023 Petunia axillaris HOM05D003662 ORTHO05D001824 2.4e-64 251.1 584 35.4
Medtr2g008750 Medicago truncatula HOM05D003662 ORTHO05D001824 4.1e-64 250.4 544 35.5
Sopen01g047650 Solanum pennellii HOM05D003662 ORTHO05D001824 2.7e-63 247.7 574 34.8
Nitab4.5_0003858g0070 Nicotiana tabacum HOM05D003662 ORTHO05D001824 1.7e-62 245.0 605 33.7
Glyma.15G053000 Glycine max HOM05D003662 ORTHO05D001824 2.3e-62 244.6 481 37.8
Lj6g0024827 Lotus japonicus HOM05D003662 ORTHO05D001824 1.1e-61 242.3 551 33.6
CSS0002395 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 2.5e-61 241.1 396 40.7
Ca_00131_v3 Cicer arietinum L. HOM05D003662 ORTHO05D001824 1.2e-60 238.8 550 34.5
Glyma.08G179400 Glycine max HOM05D003662 ORTHO05D001824 1.4e-59 235.3 477 36.7
Psat1g216760 Pisum sativum HOM05D003662 ORTHO05D001824 2.4e-59 234.6 529 35.2
arahy.Tifrunner.gnm1.ann1.9W20Y7 Arachis hypogaea HOM05D003662 ORTHO05D001824 3.1e-59 234.2 468 35.9
Rhsim05G0108400 Rhododendron simsii HOM05D003662 ORTHO05D001824 4.0e-59 233.8 567 34.2
Thhalv10003831m.g Eutrema salsugineum HOM05D003662 ORTHO05D001824 1.3e-57 228.8 531 33.1
Nitab4.5_0003174g0040 Nicotiana tabacum HOM05D003662 ORTHO05D001824 4.9e-57 226.9 607 32.9
CsaV3_4G009390 Cucumis sativus L. HOM05D003662 ORTHO05D001824 1.1e-56 225.7 538 34.6
vmacro19926 Vaccinium macrocarpon HOM05D003662 ORTHO05D001824 1.9e-56 224.9 562 34.3
AL8G41440 Arabidopsis lyrata HOM05D003662 ORTHO05D001824 2.4e-56 224.6 538 33.6
Peaxi162Scf00152g01016 Petunia axillaris HOM05D003662 ORTHO05D001824 9.2e-56 222.6 554 32.5
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 2.7e-55 221.1 580 33.1
AT5G64170 Arabidopsis thaliana HOM05D003662 ORTHO05D001824 3.5e-55 220.7 538 32.9
MELO3C019019.2 Cucumis melo HOM05D003662 ORTHO05D001824 1.0e-54 219.2 540 33.5
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 3.9e-54 217.2 478 35.8
Hund00056 Selenicereus undatus HOM05D003662 ORTHO05D001824 3.9e-54 217.2 540 34.4
Aa31LG1G17760 Aethionema arabicum HOM05D003662 ORTHO05D001824 6.6e-54 216.5 544 32.9
Lalb_Chr17g0340141 Lupinus albus HOM05D003662 ORTHO05D001824 5.6e-53 213.4 544 31.4
A06p30890 Brassica napus HOM05D003662 ORTHO05D001824 7.3e-53 213.0 545 32.5
Carub.0008s2496 Capsella rubella HOM05D003662 ORTHO05D001824 9.6e-53 212.6 537 33.0
Oeu011776.1 Olea europaea HOM05D003662 ORTHO05D001824 1.6e-52 211.8 553 33.3
Lj4g0001073 Lotus japonicus HOM05D003662 ORTHO05D001824 2.8e-52 211.1 474 32.7
BraA06t26028Z Brassica rapa HOM05D003662 ORTHO05D001824 4.0e-51 207.2 547 32.5
Medtr4g094248 Medicago truncatula HOM05D003662 ORTHO05D001824 6.9e-51 206.5 478 33.5
MSTRG.16578 Avicennia marina HOM05D003662 ORTHO05D001824 1.2e-50 205.7 557 34.3
BolC3t18469H Brassica oleracea HOM05D003662 ORTHO05D001824 3.4e-50 204.1 546 32.2
Sopen04g004230 Solanum pennellii HOM05D003662 ORTHO05D001824 4.4e-50 203.8 474 35.0
C03p62080 Brassica napus HOM05D003662 ORTHO05D001824 5.8e-50 203.4 539 32.1
BcaC01g02674 Brassica carinata HOM05D003662 ORTHO05D001824 1.7e-49 201.8 540 31.5
Migut.B00615 Erythranthe guttata HOM05D003662 ORTHO05D001824 2.2e-49 201.4 558 33.9
Sed0006995 Sechium edule HOM05D003662 ORTHO05D001824 2.9e-49 201.1 550 32.0
CARHR278080 Cardamine hirsuta HOM05D003662 ORTHO05D001824 4.9e-49 200.3 533 33.0
Glyma.05G118300 Glycine max HOM05D003662 ORTHO05D001824 6.4e-49 199.9 470 32.8
AUR62010118 Chenopodium quinoa HOM05D003662 ORTHO05D001824 1.2e-47 195.7 608 31.4
Psat7g098600 Pisum sativum HOM05D003662 ORTHO05D001824 1.2e-47 195.7 482 34.9
Ca_18346_v3 Cicer arietinum L. HOM05D003662 ORTHO05D001824 1.6e-47 195.3 474 33.5
ECA234G0654 Erigeron canadensis HOM05D000867 ORTHO05D000864 4.6e-47 193.7 536 31.7
Sed0005558 Sechium edule HOM05D003662 ORTHO05D001824 4.6e-47 193.7 538 30.9
ATR0753G089 Amborella trichopoda HOM05D003662 ORTHO05D001824 1.0e-46 192.6 604 30.1
Nn5g30130 Nelumbo nucifera HOM05D003662 ORTHO05D001824 1.7e-46 191.8 541 31.4
Lj4g0005319 Lotus japonicus HOM05D003662 ORTHO05D001824 3.0e-46 191.0 439 33.5
Sp2g27230 Schrenkiella parvula HOM05D003662 ORTHO05D001824 3.9e-46 190.7 462 33.8
SGA_v2.0_scaffold83G26297 Striga asiatica HOM05D003662 ORTHO05D001824 4.3e-45 187.2 544 31.4
BcaB02g09780 Brassica carinata HOM05D003662 ORTHO05D001824 5.6e-45 186.8 552 31.3
Lalb_Chr04g0256571 Lupinus albus HOM05D003662 ORTHO05D001824 7.3e-45 186.4 541 30.3
SalBow5G0541 Salvia bowleyana HOM05D003662 ORTHO05D001824 7.3e-45 186.4 559 30.4
Glyma.08G073300 Glycine max HOM05D003662 ORTHO05D001824 1.3e-44 185.7 436 33.9
DCAR_001790 Daucus carota HOM05D003662 ORTHO05D001824 8.1e-44 183.0 551 32.7
Lj4g0002764 Lotus japonicus HOM05D003662 ORTHO05D001824 8.1e-44 183.0 438 32.4
AUR62013113 Chenopodium quinoa HOM05D003662 ORTHO05D001824 1.1e-43 182.6 460 33.5
PGSC0003DMG400011508 Solanum tuberosum HOM05D003662 ORTHO05D001824 3.4e-42 177.6 474 31.6
Lalb_Chr10g0097751 Lupinus albus HOM05D003662 ORTHO05D001824 8.4e-41 172.9 521 29.9
BcaB07g29728 Brassica carinata HOM05D003662 ORTHO05D001824 1.9e-40 171.8 457 33.9
ECA240G2352 Erigeron canadensis HOM05D001416 ORTHO05D002549 1.9e-40 171.8 540 29.3
ClCG10G009220 Citrullus lanatus HOM05D003662 ORTHO05D001824 2.4e-40 171.4 446 34.1
Solyc04g009050.4 Solanum lycopersicum HOM05D003662 ORTHO05D001824 2.7e-39 167.9 272 40.4
Psat3g119640 Pisum sativum HOM05D003662 ORTHO05D001824 3.5e-39 167.5 366 37.4
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 3.5e-39 167.5 357 35.3
HanXRQChr16g0514001 Helianthus annuus HOM05D003662 ORTHO05D001824 2.3e-38 164.9 461 34.7
Nitab4.5_0000078g0010 Nicotiana tabacum HOM05D003662 ORTHO05D001824 2.8e-36 157.9 474 32.1
Lsat_1_v5_gn_9_117361 Lactuca sativa HOM05D003662 ORTHO05D001824 8.1e-36 156.4 549 30.6
SalBow6G1900 Salvia bowleyana HOM05D003662 ORTHO05D001824 3.4e-34 151.0 570 28.1
SalBow6G5751 Salvia bowleyana HOM05D003662 ORTHO05D001824 3.4e-34 151.0 570 28.1
Nitab4.5_0005015g0020 Nicotiana tabacum HOM05D003662 ORTHO05D001824 2.9e-33 147.9 547 29.1
MSTRG.27792 Avicennia marina HOM05D003662 ORTHO05D001824 6.4e-33 146.7 575 28.3
HanXRQChr03g0066941 Helianthus annuus HOM05D003662 ORTHO05D001824 6.4e-33 146.7 541 28.8
HanXRQChr09g0249611 Helianthus annuus HOM05D003662 ORTHO05D001824 8.4e-33 146.4 270 35.6
SGA_v2.0_scaffold332G48962 Striga asiatica HOM05D003662 ORTHO05D001824 5.5e-32 143.7 550 29.6
Lalb_Chr20g0123061 Lupinus albus HOM05D003662 ORTHO05D001824 7.1e-32 143.3 445 32.1
HanXRQChr10g0295841 Helianthus annuus HOM05D003662 ORTHO05D001824 4.6e-31 140.6 470 31.9
Oeu000241.1 Olea europaea HOM05D003662 ORTHO05D001824 1.0e-30 139.4 535 28.6
MBI05_g15584_MAGBIO Magnolia biondii HOM05D003662 ORTHO05D001824 2.5e-29 134.8 192 40.6
DCAR_021854 Daucus carota HOM05D003662 ORTHO05D001824 4.3e-29 134.0 471 28.5
Lsat_1_v5_gn_5_107161 Lactuca sativa HOM05D003662 ORTHO05D001824 5.6e-29 133.7 239 41.0
Peaxi162Scf00003g03637 Petunia axillaris HOM05D003662 ORTHO05D001824 5.6e-29 133.7 471 29.5
MSTRG.5266 Avicennia marina HOM05D003662 ORTHO05D001824 7.4e-29 133.3 498 28.7
Oeu000239.1 Olea europaea HOM05D003662 ORTHO05D001824 7.4e-29 133.3 558 27.4
BolC9t53878H Brassica oleracea HOM05D003662 ORTHO05D001824 2.4e-27 128.3 462 28.1
Oeu019219.1 Olea europaea HOM05D003662 ORTHO05D001824 5.3e-27 127.1 260 33.8
PSO541G6545 Papaver somniferum HOM05D003662 ORTHO05D001824 2.5e-21 108.2 534 26.8
arahy.Tifrunner.gnm1.ann1.KQY3HF Arachis hypogaea HOM05D003662 ORTHO05D001824 4.3e-21 107.5 240 33.3
PSO781G0010 Papaver somniferum HOM05D003662 ORTHO05D001824 4.3e-21 107.5 544 27.2
CDE12G0772 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 1.6e-20 105.5 575 26.4
C02p63220 Brassica napus HOM05D003662 ORTHO05D001824 1.4e-19 102.4 98 52.0
unitig_578.g15971 Utricularia gibba HOM05D003662 ORTHO05D001824 8.5e-17 93.2 235 31.1
BcaC03g18249 Brassica carinata HOM05D003662 ORTHO05D001824 1.4e-16 92.4 349 26.4
unitig_8.g3485 Utricularia gibba HOM05D003662 ORTHO05D001824 2.5e-16 91.7 171 36.3
CDE04G1684 Ceratophyllum demersum HOM05D003662 ORTHO05D001824 3.2e-16 91.3 346 28.6
TPR.G13600 Trifolium pratense HOM05D003662 ORTHO05D001824 5.1e-14 84.0 76 56.6
SEGI_41395 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 1.7e-12 79.0 458 25.3
unitig_749.g14155 Utricularia gibba HOM05D003662 ORTHO05D001824 4.8e-12 77.4 228 27.6
MBI13_g36284_MAGBIO Magnolia biondii HOM05D004414 ORTHO05D001824 6.3e-12 77.0 571 23.5
PSO210G5924 Papaver somniferum HOM05D003662 ORTHO05D001824 1.1e-11 76.3 171 32.2
PSO447G0309 Papaver somniferum HOM05D003662 ORTHO05D001824 3.1e-11 74.7 183 31.1
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 2.0e-10 72.0 54 66.7
C09p09670 Brassica napus HOM05D003662 ORTHO05D001824 2.6e-10 71.6 423 25.1
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 6.5e-09 67.0 252 31.0
Dinv32037 Davidia involucrata HOM05D004414 ORTHO05D001824 1.4e-08 65.9 226 26.5
AagrBONN_evm.TU.Sc2ySwM_344.4535 Anthoceros agrestis HOM05D004414 ORTHO05D001824 7.2e-08 63.5 233 28.3
Nn1g05340 Nelumbo nucifera HOM05D003662 ORTHO05D001824 1.2e-07 62.8 196 28.6
Zm00001eb341790 Zea mays HOM05D004414 ORTHO05D001824 1.6e-07 62.4 209 25.4
TAR369G0352 Trochodendron aralioides HOM05D004414 ORTHO05D001824 4.7e-07 60.8 576 24.1
TPR.G21004 Trifolium pratense HOM05D003662 ORTHO05D001824 7.9e-07 60.1 39 69.2
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 1.0e-06 59.7 43 65.1
Zm00001eb392400 Zea mays HOM05D003662 ORTHO05D001824 1.4e-06 59.3 78 43.6
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 1.8e-06 58.9 585 23.1
Os03g0387900 Oryza sativa ssp. japonica HOM05D003662 ORTHO05D001824 2.3e-06 58.5 130 33.8
SEGI_03595 Sequoiadendron giganteum HOM05D004414 ORTHO05D001824 3.0e-06 58.2 575 22.8
TAR633G1473 Trochodendron aralioides HOM05D004414 ORTHO05D001824 3.0e-06 58.2 588 24.8
Sopen01g030520 Solanum pennellii HOM05D004414 ORTHO05D001824 3.9e-06 57.8 436 25.5
CDE10G1254 Ceratophyllum demersum HOM05D004414 ORTHO05D001824 5.1e-06 57.4 229 25.3
Mapoly0014s0165 Marchantia polymorpha HOM05D004414 ORTHO05D001824 5.1e-06 57.4 251 27.5


User provided reference genes

Program Settings