Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 1.0e-257 892.9 446 100.0
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.6e-146 523.5 348 74.7
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.6e-146 523.5 347 74.1
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.7e-146 521.9 348 74.4
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 2.2e-143 513.1 345 73.0
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.9e-142 510.0 350 72.3
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.4e-142 509.6 348 71.8
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 7.0e-142 508.1 352 71.3
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.2e-141 507.3 347 72.0
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.1e-141 506.5 347 71.8
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 2.1e-141 506.5 348 70.7
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.5e-141 505.8 347 72.0
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 4.6e-141 505.4 348 70.1
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 6.0e-141 505.0 351 71.5
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 6.0e-141 505.0 351 69.2
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 7.8e-141 504.6 348 71.0
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 7.8e-141 504.6 347 70.6
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.0e-140 504.2 352 70.7
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 1.7e-140 503.4 352 69.6
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 5.1e-140 501.9 350 70.6
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 8.6e-140 501.1 347 73.8
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.1e-139 500.7 352 69.3
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.1e-139 500.7 352 69.3
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.5e-139 500.4 351 68.7
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 3.3e-139 499.2 348 70.7
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 3.3e-139 499.2 348 71.6
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 4.3e-139 498.8 351 68.7
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 5.6e-139 498.4 351 68.4
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 7.3e-139 498.0 345 71.9
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 9.5e-139 497.7 348 71.0
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 1.6e-138 496.9 348 70.4
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 1.6e-138 496.9 348 70.4
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 1.6e-138 496.9 348 70.7
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 2.8e-138 496.1 348 69.5
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 2.8e-138 496.1 351 71.2
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 2.8e-138 496.1 352 70.2
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 2.8e-138 496.1 348 71.6
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 8.1e-138 494.6 352 69.3
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 8.1e-138 494.6 348 69.8
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 1.4e-137 493.8 348 71.0
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 1.8e-137 493.4 348 69.3
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 2.3e-137 493.0 348 71.3
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 2.3e-137 493.0 348 69.5
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 8.9e-137 491.1 344 70.1
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 1.2e-136 490.7 344 70.6
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-136 490.7 348 69.5
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 2.0e-136 490.0 353 70.3
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 2.6e-136 489.6 348 68.7
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 2.6e-136 489.6 348 70.4
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 2.6e-136 489.6 348 70.4
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 5.8e-136 488.4 348 69.8
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 7.5e-136 488.0 347 70.3
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 9.9e-136 487.6 348 67.5
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 1.3e-135 487.3 345 69.9
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 1.7e-135 486.9 348 69.8
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 2.2e-135 486.5 348 70.1
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 2.2e-135 486.5 348 69.5
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 2.2e-135 486.5 348 69.0
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 2.9e-135 486.1 348 69.0
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 2.9e-135 486.1 348 68.1
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 4.9e-135 485.3 348 68.1
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 8.3e-135 484.6 345 68.7
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 1.1e-134 484.2 348 69.8
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 2.4e-134 483.0 348 69.3
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 3.2e-134 482.6 348 69.0
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 5.4e-134 481.9 351 67.5
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 7.1e-134 481.5 347 67.4
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 7.1e-134 481.5 351 69.2
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.2e-133 480.7 348 67.5
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 2.1e-133 479.9 348 67.8
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 7.8e-133 478.0 347 67.1
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 1.7e-132 476.9 349 68.5
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 3.9e-132 475.7 348 67.5
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 5.1e-132 475.3 348 66.7
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 1.1e-131 474.2 345 68.1
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 1.5e-131 473.8 344 70.3
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 2.5e-131 473.0 332 70.2
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 3.3e-131 472.6 421 59.1
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.3e-131 472.6 348 67.2
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 4.3e-131 472.2 363 66.4
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 1.2e-130 470.7 345 67.8
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 6.2e-130 468.4 379 63.1
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.1e-129 467.6 379 63.1
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.1e-129 467.6 345 67.8
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 2.4e-129 466.5 348 66.4
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 2.4e-129 466.5 348 67.5
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 4.0e-129 465.7 348 67.2
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.0e-128 463.4 344 65.4
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 2.4e-126 456.4 348 66.4
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 4.3e-123 445.7 348 63.8
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 9.9e-120 434.5 336 65.5
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 9.9e-120 434.5 348 62.6
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 1.7e-119 433.7 318 67.6
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.9e-115 420.2 348 61.2
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 4.5e-112 409.1 318 65.4
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 2.2e-111 406.8 348 60.1
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.7e-103 380.6 350 55.1
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 1.7e-103 380.6 374 54.0
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 4.9e-103 379.0 347 58.2
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 1.1e-102 377.9 255 70.2
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.2e-101 374.4 363 57.6
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 4.0e-97 359.4 348 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 1.5e-96 357.5 350 52.9
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 2.1e-93 347.1 210 77.1
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 3.5e-93 346.3 353 53.0
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.5e-91 340.9 348 51.1
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 8.2e-90 335.1 348 51.1
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.1e-89 334.7 208 76.4
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-88 330.5 356 48.3
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 2.6e-88 330.1 350 52.3
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 5.9e-88 328.9 350 52.3
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 7.7e-88 328.6 351 50.4
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 3.8e-87 326.2 255 66.3
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 6.5e-87 325.5 349 49.3
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 2.5e-86 323.6 349 49.6
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 9.4e-86 321.6 349 50.4
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 2.1e-85 320.5 350 49.1
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 7.9e-85 318.5 348 48.9
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-83 314.7 349 48.7
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.5e-83 314.3 352 48.9
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-83 313.9 350 48.9
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-82 311.2 348 48.6
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 6.3e-82 308.9 349 47.9
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.4e-78 297.7 348 47.7
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 1.4e-76 291.2 218 66.5
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 3.0e-76 290.0 349 45.8
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 2.6e-72 276.9 349 45.3
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 7.2e-70 268.9 249 55.8
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 1.6e-69 267.7 349 44.4
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.1e-69 267.3 349 43.0
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 6.8e-60 235.7 133 83.5
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 3.4e-59 233.4 201 59.2
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 4.0e-52 209.9 183 59.6
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-51 208.4 213 54.5
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 2.0e-51 207.6 208 55.8
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 7.5e-51 205.7 173 61.3
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 1.9e-46 191.0 127 70.1
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 7.2e-46 189.1 229 45.0
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 3.6e-45 186.8 250 44.8
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 6.1e-45 186.0 143 64.3
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 3.7e-42 176.8 211 45.0
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 4.9e-42 176.4 101 78.2
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 2.7e-40 170.6 158 54.4
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 5.9e-40 169.5 355 35.2
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 9.5e-30 135.6 269 33.5
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 2.3e-28 131.0 79 75.9
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.1e-24 117.9 362 26.8
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 3.5e-24 117.1 98 59.2
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 4.6e-24 116.7 78 65.4
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 4.6e-24 116.7 67 70.1
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.7e-23 114.8 201 33.8
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 7.3e-22 109.4 254 30.3
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 1.4e-17 95.1 70 67.1
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 7.1e-17 92.8 273 29.3
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 1.2e-16 92.0 204 34.3
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.6e-16 91.7 66 68.2
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.7e-16 90.9 255 31.4
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 4.7e-13 80.1 59 66.1
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.8e-12 78.2 54 66.7
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 1.3e-10 72.0 117 37.6
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 1.7e-10 71.6 53 64.2
Cpa.g.sc263.20 Carica papaya HOM05D004164 ORTHO05D004891 2.9e-10 70.9 38 86.8
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.7e-08 64.3 118 36.4
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.0e-07 62.4 29 93.1
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 8.7e-07 59.3 183 29.0


User provided reference genes

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