Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 3.6e-71 272.3 249 100.0
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 2.7e-18 96.7 86 62.8
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 5.2e-17 92.4 85 54.1
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 1.1e-16 91.3 86 55.8
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 1.5e-16 90.9 86 55.8
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 2.0e-16 90.5 87 54.0
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.3e-16 89.7 86 55.8
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.3e-15 87.8 79 55.7
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.8e-15 86.7 85 48.2
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.8e-15 85.9 83 53.0
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.1e-14 83.2 83 51.8
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 3.1e-14 83.2 83 50.6
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 1.2e-13 81.3 86 48.8
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.2e-13 81.3 86 52.3
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 1.6e-13 80.9 75 57.3
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 2.0e-13 80.5 85 50.6
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.5e-13 79.7 79 51.9
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 4.5e-13 79.3 69 56.5
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 4.5e-13 79.3 83 49.4
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 5.9e-13 79.0 84 53.6
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 5.9e-13 79.0 85 49.4
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 1.0e-12 78.2 81 53.1
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.0e-12 78.2 80 52.5
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.3e-12 77.8 82 51.2
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 3.8e-12 76.3 84 52.4
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 3.8e-12 76.3 84 52.4
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 5.0e-12 75.9 82 47.6
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 6.5e-12 75.5 73 60.3
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.9e-11 73.9 85 48.2
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.9e-11 73.9 73 58.9
Sp1g41920 Schrenkiella parvula HOM05D003899 ORTHO05D003655 1.9e-11 73.9 81 51.9
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.5e-11 73.6 97 42.3
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 2.5e-11 73.6 73 57.5
THA.LOC104800071 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 4.2e-11 72.8 83 47.0
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 5.5e-11 72.4 92 47.8
BraA07t27814Z Brassica rapa HOM05D003899 ORTHO05D003655 9.4e-11 71.6 81 50.6
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 1.2e-10 71.2 91 47.3
Duzib093G0910 Durio zibethinus HOM05D003899 ORTHO05D003655 1.2e-10 71.2 86 46.5
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 2.1e-10 70.5 62 54.8
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 2.7e-10 70.1 86 39.5
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 2.7e-10 70.1 84 42.9
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.7e-10 70.1 88 42.0
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 2.7e-10 70.1 88 42.0
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 3.6e-10 69.7 87 48.3
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 4.7e-10 69.3 83 45.8
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 8.0e-10 68.6 51 64.7
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 1.0e-09 68.2 83 41.0
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 1.4e-09 67.8 77 42.9
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.3e-09 67.0 78 42.3
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 2.3e-09 67.0 77 48.1
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 3.0e-09 66.6 76 48.7
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 4.0e-09 66.2 58 60.3
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 5.2e-09 65.9 76 48.7
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 5.2e-09 65.9 80 48.8
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 6.7e-09 65.5 61 50.8
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 6.7e-09 65.5 61 50.8
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 6.7e-09 65.5 93 41.9
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.7e-09 65.5 93 41.9
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 6.7e-09 65.5 85 45.9
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 8.8e-09 65.1 92 42.4
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 8.8e-09 65.1 76 42.1
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.2e-08 64.7 59 52.5
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 1.2e-08 64.7 49 59.2
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.5e-08 64.3 72 47.2
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 1.5e-08 64.3 88 44.3
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 1.5e-08 64.3 85 41.2
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 1.5e-08 64.3 64 51.6
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 1.5e-08 64.3 83 44.6
AL1G64600 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 2.0e-08 63.9 81 45.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.0e-08 63.9 61 50.8
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.0e-08 63.9 85 38.8
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.0e-08 63.9 85 38.8
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 2.0e-08 63.9 95 44.2
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 2.6e-08 63.5 85 43.5
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 2.6e-08 63.5 61 49.2
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.6e-08 63.5 59 50.8
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.3e-08 63.2 85 43.5
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.3e-08 63.2 83 45.8
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.3e-08 63.2 92 41.3
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 3.3e-08 63.2 49 53.1
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 4.4e-08 62.8 51 54.9
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 4.4e-08 62.8 66 51.5
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 4.4e-08 62.8 91 41.8
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 5.7e-08 62.4 61 47.5
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 7.5e-08 62.0 54 51.9
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 7.5e-08 62.0 54 51.9
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 7.5e-08 62.0 54 51.9
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 7.5e-08 62.0 61 52.5
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 7.5e-08 62.0 85 43.5
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 7.5e-08 62.0 83 36.1
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 7.5e-08 62.0 92 42.4
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 7.5e-08 62.0 57 57.9
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 9.7e-08 61.6 46 56.5
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 9.7e-08 61.6 79 45.6
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.3e-07 61.2 88 45.5
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 1.3e-07 61.2 84 42.9
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.7e-07 60.8 63 52.4
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 1.7e-07 60.8 77 44.2
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 2.2e-07 60.5 89 40.4
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 2.8e-07 60.1 51 54.9
Nitab4.5_0015327g0010 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.8e-07 60.1 79 43.0
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 3.7e-07 59.7 81 42.0
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 3.7e-07 59.7 70 41.4
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 4.8e-07 59.3 81 50.6
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 4.8e-07 59.3 78 44.9
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 4.8e-07 59.3 77 40.3
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 6.3e-07 58.9 73 46.6
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 6.3e-07 58.9 78 47.4
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 6.3e-07 58.9 83 43.4
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 8.2e-07 58.5 86 41.9
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 1.1e-06 58.2 57 47.4
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.1e-06 58.2 86 44.2
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.1e-06 58.2 87 43.7
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.4e-06 57.8 78 37.2
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 1.8e-06 57.4 56 48.2
CSS0023777 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.8e-06 57.4 80 38.8
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.8e-06 57.4 47 55.3
HPP92_002045 Vanilla planifolia HOM05D003899 ORTHO05D003655 1.8e-06 57.4 51 49.0
Peaxi162Scf00263g00033 Petunia axillaris HOM05D003899 ORTHO05D003655 2.4e-06 57.0 80 43.8
Sc16g0003890 Simmondsia chinensis HOM05D003899 ORTHO05D003655 2.4e-06 57.0 81 39.5
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 3.1e-06 56.6 45 55.6
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 4.1e-06 56.2 87 43.7
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 5.3e-06 55.8 76 42.1
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 7.0e-06 55.5 66 40.9
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 7.0e-06 55.5 66 40.9
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 9.1e-06 55.1 49 49.0
Nitab4.5_0002974g0030 Nicotiana tabacum HOM05D003899 ORTHO05D003655 9.1e-06 55.1 79 40.5


User provided reference genes

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