Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.4e-40 168.3 81 100.0
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.3e-22 109.4 79 69.6
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 6.6e-22 107.1 79 68.4
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-21 105.1 79 70.9
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.5e-21 105.1 79 70.9
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.5e-21 105.1 76 72.4
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.6e-20 102.4 78 65.4
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 3.6e-20 101.3 79 67.1
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.1e-19 99.8 79 64.6
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.4e-19 99.4 78 65.4
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.2e-18 96.3 78 61.5
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.5e-18 95.9 79 63.3
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.6e-18 95.1 79 63.3
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.6e-18 95.1 67 68.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.4e-18 94.7 66 66.7
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.4e-18 94.4 77 64.9
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.8e-18 93.2 77 64.9
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 9.8e-18 93.2 77 64.9
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 9.8e-18 93.2 79 62.0
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.7e-17 92.4 79 62.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.7e-17 92.4 79 62.0
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.9e-17 91.7 79 58.2
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.7e-17 91.3 79 62.0
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.4e-16 89.4 75 66.7
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.4e-16 88.6 78 57.7
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 2.4e-16 88.6 70 62.9
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 3.2e-16 88.2 81 55.6
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 9.2e-16 86.7 80 60.0
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 9.2e-16 86.7 77 58.4
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.2e-15 86.3 79 60.8
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.6e-15 85.9 74 59.5
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.6e-15 85.9 66 65.2
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-15 85.5 79 60.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.0e-15 85.5 78 59.0
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 2.3e-14 82.0 79 57.0
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 3.0e-14 81.6 73 57.5
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.0e-14 81.6 71 56.3
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.9e-14 81.3 67 62.7
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 6.6e-14 80.5 75 57.3
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 8.6e-14 80.1 79 57.0
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.1e-13 79.7 93 48.4
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.1e-13 79.7 93 48.4
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.1e-13 79.7 93 48.4
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.1e-13 79.7 79 55.7
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.1e-13 79.7 93 50.5
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.9e-13 79.0 76 56.6
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.9e-13 79.0 76 56.6
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.9e-13 79.0 76 56.6
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.9e-13 79.0 76 56.6
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.9e-13 79.0 76 56.6
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.5e-13 78.6 67 62.7
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.5e-13 78.6 93 47.3
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 5.6e-13 77.4 84 52.4
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 5.6e-13 77.4 78 53.8
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-12 75.1 79 57.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-12 75.1 79 57.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 2.8e-12 75.1 79 57.0
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 3.6e-12 74.7 72 59.7
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.7e-12 74.3 73 53.4
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.7e-12 74.3 51 68.6
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-12 73.9 73 49.3
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 6.2e-12 73.9 73 49.3
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 8.1e-12 73.6 81 55.6
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.1e-11 73.2 72 50.0
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.1e-11 73.2 71 49.3
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.1e-11 73.2 71 49.3
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.1e-11 73.2 71 49.3
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.4e-11 72.8 71 56.3
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.4e-11 72.8 71 56.3
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-11 72.4 79 48.1
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-11 72.4 78 51.3
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-11 72.4 78 51.3
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-11 72.4 71 54.9
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.8e-11 72.4 71 54.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.8e-11 72.4 71 49.3
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.8e-11 72.4 81 51.9
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.1e-11 71.6 73 56.2
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 3.1e-11 71.6 79 51.9
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 4.0e-11 71.2 75 52.0
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 6.8e-11 70.5 46 67.4
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 8.9e-11 70.1 79 54.4
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 8.9e-11 70.1 78 52.6
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 1.2e-10 69.7 66 50.0
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.2e-10 69.7 72 54.2
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 3.4e-10 68.2 69 50.7
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 3.4e-10 68.2 76 50.0
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-10 67.8 79 48.1
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 4.4e-10 67.8 79 48.1
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 4.4e-10 67.8 44 68.2
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 4.4e-10 67.8 73 54.8
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 7.5e-10 67.0 99 44.4
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 7.5e-10 67.0 99 44.4
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 7.5e-10 67.0 78 47.4
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 7.5e-10 67.0 64 56.2
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 9.9e-10 66.6 85 45.9
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 9.9e-10 66.6 50 66.0
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.3e-09 66.2 72 50.0
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 4.9e-09 64.3 77 50.6
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 4.9e-09 64.3 74 50.0
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 4.9e-09 64.3 74 52.7
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.4e-09 63.9 80 50.0
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 6.4e-09 63.9 75 49.3
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 8.3e-09 63.5 88 46.6
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 8.3e-09 63.5 79 46.8
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 8.3e-09 63.5 79 46.8
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 8.3e-09 63.5 79 46.8
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 8.3e-09 63.5 83 47.0
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 8.3e-09 63.5 72 48.6
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.4e-08 62.8 83 44.6
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 1.4e-08 62.8 79 46.8
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 1.4e-08 62.8 72 48.6
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.9e-08 62.4 81 48.1
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-08 61.6 85 42.4
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 4.1e-08 61.2 81 44.4
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 7.1e-08 60.5 82 47.6
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-07 59.7 37 67.6
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.2e-07 59.7 74 48.6
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-07 59.3 37 67.6
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-07 59.3 37 67.6
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-07 59.3 37 67.6
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 2.1e-07 58.9 60 46.7
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.1e-07 58.9 41 68.3
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 2.7e-07 58.5 64 45.3
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 3.5e-07 58.2 29 75.9
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 3.5e-07 58.2 77 42.9
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-07 57.8 73 46.6
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 6.0e-07 57.4 40 67.5
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 6.0e-07 57.4 66 51.5
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 7.8e-07 57.0 58 51.7
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 7.8e-07 57.0 70 44.3
Os04g0418100 Oryza sativa ssp. japonica HOM05D047234 ORTHO05D004852 1.0e-06 56.6 61 50.8
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 1.3e-06 56.2 37 64.9
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-06 55.8 41 65.9
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 1.7e-06 55.8 41 65.9
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 1.7e-06 55.8 41 65.9
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 2.3e-06 55.5 36 72.2
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 2.3e-06 55.5 73 45.2
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 2.3e-06 55.5 73 45.2
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.3e-06 55.5 76 47.4
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.3e-06 55.5 76 47.4
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 3.0e-06 55.1 41 65.9
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 3.0e-06 55.1 35 65.7
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 3.0e-06 55.1 73 43.8
Cpa.g.sc49.40 Carica papaya HOM05D004540 ORTHO05D004852 3.9e-06 54.7 67 41.8
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 8.6e-06 53.5 66 43.9


User provided reference genes

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