Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 0.0e+00 1389.8 711 100.0
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 1.8e-248 862.8 683 65.9
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 2.3e-248 862.4 683 64.7
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 9.6e-242 840.5 683 65.4
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 3.6e-241 838.6 683 64.9
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 2.7e-228 795.8 682 61.1
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 3.5e-228 795.4 750 59.5
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 3.3e-226 788.9 682 61.1
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 4.3e-226 788.5 683 61.8
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 7.3e-226 787.7 683 61.8
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 4.9e-222 775.0 709 60.2
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 3.9e-219 765.4 683 60.9
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 6.7e-219 764.6 665 63.2
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 1.5e-218 763.5 684 61.4
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 9.6e-218 760.8 632 63.0
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 2.8e-217 759.2 717 59.1
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 1.5e-215 753.4 710 59.4
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 9.0e-208 727.6 707 58.1
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 6.7e-203 711.4 841 50.9
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 1.5e-202 710.3 683 58.4
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 5.3e-200 701.8 714 56.0
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 1.9e-197 693.3 714 54.5
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 4.2e-197 692.2 688 57.3
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 7.2e-197 691.4 687 57.1
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 7.2e-197 691.4 700 54.9
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 2.1e-196 689.9 702 56.6
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 2.1e-196 689.9 699 56.1
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 6.1e-196 688.3 689 57.9
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 7.9e-196 688.0 699 55.1
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 5.1e-195 685.3 699 54.1
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 5.1e-195 685.3 683 55.6
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 1.3e-193 680.6 699 54.4
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 1.7e-193 680.2 690 54.2
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 3.7e-193 679.1 693 54.8
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 1.8e-192 676.8 689 57.5
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 4.1e-192 675.6 700 53.7
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 1.5e-191 673.7 691 54.3
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 1.5e-191 673.7 691 54.3
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 1.5e-191 673.7 691 54.3
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 3.4e-191 672.5 689 53.7
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 5.9e-191 671.8 714 55.3
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 5.9e-191 671.8 686 56.4
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 7.7e-191 671.4 690 54.8
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 1.3e-190 670.6 706 55.4
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 6.5e-190 668.3 694 53.2
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 1.1e-189 667.5 720 53.3
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 1.4e-189 667.2 691 54.1
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 1.4e-189 667.2 745 52.3
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 1.4e-189 667.2 683 55.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 2.5e-189 666.4 683 54.2
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 1.2e-188 664.1 694 53.5
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 3.6e-188 662.5 697 53.2
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 1.8e-187 660.2 611 57.6
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 3.9e-187 659.1 692 55.8
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 8.8e-187 657.9 692 54.3
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 8.8e-187 657.9 715 52.9
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 1.1e-186 657.5 710 52.5
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.3e-185 654.1 722 53.7
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 3.7e-185 652.5 715 52.7
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 9.1e-184 647.9 715 50.9
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.2e-183 647.5 739 53.9
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 1.5e-183 647.1 681 53.6
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.0e-182 644.4 722 53.3
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 5.0e-182 642.1 684 52.6
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 1.1e-181 641.0 697 52.5
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 1.5e-181 640.6 684 51.5
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 2.1e-180 636.7 763 51.4
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 3.6e-180 636.0 683 52.1
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 4.7e-180 635.6 729 52.0
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.1e-176 624.4 667 53.5
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 2.2e-174 616.7 691 52.1
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 2.5e-173 613.2 758 48.3
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 9.4e-173 611.3 803 48.9
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 8.8e-171 604.7 708 50.1
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 4.4e-170 602.4 661 51.3
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 3.7e-169 599.4 682 51.2
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 1.1e-168 597.8 701 49.6
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 3.1e-168 596.3 665 49.5
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.0e-166 591.3 706 48.7
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 5.5e-165 585.5 721 48.3
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 9.4e-165 584.7 600 53.8
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 1.6e-164 583.9 693 50.2
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 6.1e-164 582.0 735 48.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 8.0e-164 581.6 699 49.8
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 1.3e-161 574.3 692 49.0
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 6.3e-161 572.0 724 46.8
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 1.8e-160 570.5 723 47.9
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 1.2e-159 567.8 703 47.7
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 8.9e-155 551.6 648 49.4
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 2.3e-150 537.0 771 43.2
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.6e-146 523.5 722 44.5
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 9.2e-144 515.0 506 54.5
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 2.7e-143 513.5 683 46.6
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 1.8e-139 500.7 700 45.0
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.3e-133 479.9 675 44.4
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 1.6e-127 461.1 386 63.0
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 1.4e-115 421.4 619 42.3
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.2e-111 408.3 617 42.0
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.0e-102 377.1 330 62.1
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 1.9e-101 374.4 405 52.6
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 7.1e-96 355.9 678 36.1
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 2.8e-92 344.0 567 39.5
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 3.3e-85 320.5 237 66.2
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 5.9e-74 283.1 318 50.3
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 1.1e-72 278.9 371 47.7
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.5e-66 256.9 229 61.1
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 4.4e-61 240.4 351 41.0
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 1.7e-60 238.4 577 31.5
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 8.5e-57 226.1 259 45.6
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 8.8e-54 216.1 305 45.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 2.8e-44 184.5 607 26.5
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 4.9e-36 157.1 286 37.4
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 7.0e-35 153.3 197 42.6
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.5e-32 145.6 214 43.9
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.2e-26 125.9 175 47.4
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.5e-24 119.0 153 47.1
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 7.1e-19 100.1 532 22.6
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.7e-17 95.5 106 50.9
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 6.6e-17 93.6 199 37.7
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.2e-15 89.4 283 27.6
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 6.8e-14 83.6 160 36.2
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 1.2e-10 72.8 61 60.7
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 4.6e-10 70.9 74 52.7
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 9.6e-08 63.2 124 40.3
Sabra05G0049200 Salix brachista HOM05D005030 ORTHO05D006490 3.1e-06 58.2 97 44.3


User provided reference genes

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