Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 6.4e-224 780.4 387 100.0
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 2.7e-150 535.8 385 69.4
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 4.0e-149 531.9 385 69.4
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.4e-146 523.5 382 67.8
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.1e-143 513.8 376 68.6
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 7.2e-143 511.1 384 65.9
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 3.6e-142 508.8 379 67.3
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.7e-142 508.4 382 68.8
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 3.0e-141 505.8 390 67.9
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 5.2e-141 505.0 369 68.0
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 2.6e-140 502.7 367 66.8
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 4.4e-140 501.9 376 68.1
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.4e-140 501.9 376 67.6
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 9.8e-140 500.7 380 66.6
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.4e-138 496.1 371 65.8
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 3.1e-138 495.7 379 66.0
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 4.1e-138 495.4 371 65.8
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.4e-138 495.0 371 65.5
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 9.1e-138 494.2 371 65.8
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 7.7e-137 491.1 378 63.8
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.3e-136 490.3 367 66.2
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 3.8e-136 488.8 350 68.6
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.1e-134 483.0 366 66.4
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.8e-133 479.9 375 63.7
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 4.0e-133 478.8 370 63.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.0e-132 476.5 349 69.1
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 4.4e-132 475.3 334 70.4
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 2.2e-131 473.0 334 70.1
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.2e-131 473.0 397 60.7
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 8.3e-131 471.1 385 63.1
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 9.2e-130 467.6 333 70.3
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 5.9e-129 464.9 371 65.0
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.3e-128 463.0 343 68.2
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.3e-127 458.8 366 63.4
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.6e-126 456.8 366 62.8
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.8e-125 453.4 371 62.3
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 2.3e-125 453.0 372 61.0
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.3e-125 453.0 373 62.5
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 2.0e-124 449.9 335 67.2
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.4e-124 449.1 339 67.3
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 7.5e-124 448.0 357 63.6
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.3e-123 447.2 333 68.5
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 6.4e-123 444.9 335 66.3
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.1e-122 444.1 328 67.4
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 2.4e-122 443.0 342 66.7
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.4e-122 443.0 369 61.8
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 3.2e-122 442.6 350 64.3
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 4.1e-122 442.2 372 61.6
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 4.6e-121 438.7 373 61.4
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.0e-120 437.6 330 66.7
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.0e-120 437.6 372 61.3
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.7e-120 436.8 338 65.7
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 1.5e-119 433.7 369 61.0
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 2.5e-119 433.0 356 61.2
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.6e-119 431.8 290 74.1
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 1.2e-118 430.6 356 61.0
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 1.2e-118 430.6 382 58.6
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-118 430.3 290 74.1
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.6e-118 429.1 385 58.4
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.4e-117 427.2 331 66.2
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 3.1e-117 426.0 369 59.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 4.0e-117 425.6 331 66.2
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 5.2e-117 425.2 356 61.2
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.5e-116 423.7 356 61.5
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.1e-114 417.5 439 52.2
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.6e-113 413.7 368 56.8
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 2.1e-113 413.3 365 61.4
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 4.6e-113 412.1 373 57.1
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 7.8e-113 411.4 331 64.7
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 1.0e-112 411.0 369 58.8
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 3.6e-110 402.5 379 55.7
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.1e-109 401.0 362 58.0
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.1e-109 401.0 350 58.3
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.4e-109 400.6 382 55.0
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.4e-109 400.6 373 55.5
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.8e-109 400.2 383 56.9
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.3e-109 399.8 374 57.8
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 5.2e-109 398.7 380 54.7
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 1.2e-108 397.5 369 59.1
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.0e-108 396.7 382 55.2
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 4.4e-108 395.6 374 54.5
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 4.4e-108 395.6 337 59.1
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 5.8e-108 395.2 378 54.0
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.7e-107 393.7 372 54.8
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.4e-106 390.6 371 55.0
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 2.4e-106 389.8 284 69.0
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 7.1e-106 388.3 374 54.8
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.2e-105 387.5 401 52.9
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 1.2e-105 387.5 363 55.9
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 1.6e-105 387.1 318 60.1
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 3.5e-105 386.0 375 55.2
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.7e-104 383.6 349 55.6
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 3.0e-104 382.9 372 57.3
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.5e-103 379.8 338 58.6
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 9.5e-103 377.9 390 53.3
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.6e-102 377.1 334 59.3
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.1e-102 376.7 269 66.9
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 2.1e-102 376.7 372 54.6
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 2.8e-102 376.3 348 55.5
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 3.6e-102 375.9 291 63.2
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 3.6e-102 375.9 384 52.9
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 5.8e-100 368.6 345 55.4
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.9e-99 365.5 329 58.4
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 9.6e-95 351.3 333 53.2
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 1.2e-92 344.4 313 53.7
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.0e-92 343.6 280 62.1
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.5e-89 332.8 357 51.3
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 3.3e-87 326.2 273 60.1
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.8e-86 323.2 327 51.1
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 1.2e-84 317.8 341 51.3
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 7.4e-79 298.5 327 48.6
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 9.0e-77 291.6 195 73.8
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 9.0e-77 291.6 283 50.9
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.9e-74 283.9 287 51.9
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 5.5e-74 282.3 263 57.0
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.4e-66 257.7 241 54.8
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.4e-66 257.7 279 45.5
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 3.5e-65 253.1 273 47.3
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.3e-64 250.4 289 46.4
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 4.3e-63 246.1 268 46.6
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.3e-62 244.6 270 46.3
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 1.1e-61 241.5 280 46.4
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 5.7e-55 219.2 296 41.9
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.1e-53 214.9 163 65.6
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 5.1e-48 196.1 178 57.3
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 7.7e-36 155.6 146 54.8
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 5.5e-34 149.4 137 56.9
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 4.5e-28 129.8 93 65.6
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 2.0e-23 114.4 108 55.6
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 8.3e-22 109.0 86 62.8
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 5.4e-21 106.3 124 49.2
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 5.4e-21 106.3 124 49.2
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.0e-20 104.4 170 40.6
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 1.0e-16 92.0 66 72.7
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 5.4e-13 79.7 90 48.9
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.9e-11 73.9 71 52.1
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 9.5e-10 68.9 99 37.4
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 2.6e-07 60.8 122 32.8
Nn5g27156 Nelumbo nucifera HOM05D000559 ORTHO05D000596 2.6e-07 60.8 111 34.2
AUR62004081 Chenopodium quinoa HOM05D004293 ORTHO05D005044 3.4e-07 60.5 278 24.8
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 4.4e-07 60.1 53 58.5
BcaB01g04637 Brassica carinata HOM05D005476 ORTHO05D021669 7.5e-07 59.3 42 71.4
AUR62007593 Chenopodium quinoa HOM05D000025 ORTHO05D005044 7.5e-07 59.3 278 24.8
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 1.7e-06 58.2 53 56.6
FvH4_2g00080 Fragaria vesca HOM05D000559 ORTHO05D000596 1.7e-06 58.2 111 32.4
AT1G66430 Arabidopsis thaliana HOM05D000559 ORTHO05D000596 2.2e-06 57.8 296 24.0
Manes.15G189700 Manihot esculenta HOM05D000559 ORTHO05D000596 2.2e-06 57.8 111 30.6
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 2.2e-06 57.8 55 54.5
arahy.Tifrunner.gnm1.ann1.E80PU7 Arachis hypogaea HOM05D000559 ORTHO05D000596 2.9e-06 57.4 111 33.3
EL10Ac6g15533 Beta vulgaris HOM05D004293 ORTHO05D005044 2.9e-06 57.4 288 24.3
FAN19G2609 Fragaria x ananassa HOM05D000559 ORTHO05D000596 2.9e-06 57.4 111 31.5
Hma1.2p1_0050F.1_g029200 Hydrangea macrophylla HOM05D000559 ORTHO05D000596 2.9e-06 57.4 111 29.7
EL10Ac3g05743 Beta vulgaris HOM05D000559 ORTHO05D000596 3.7e-06 57.0 288 24.0
FAN15G1117 Fragaria x ananassa HOM05D000559 ORTHO05D000596 3.7e-06 57.0 111 31.5
Carub.0002s1247 Capsella rubella HOM05D000559 ORTHO05D000596 4.9e-06 56.6 111 32.4
HanXRQChr05g0151741 Helianthus annuus HOM05D004293 ORTHO05D005044 4.9e-06 56.6 123 35.8
THA.LOC104806478 Tarenaya hassleriana HOM05D000559 ORTHO05D000596 4.9e-06 56.6 111 31.5
AL2G24240 Arabidopsis lyrata HOM05D000559 ORTHO05D000596 6.4e-06 56.2 295 24.1
FAN23G1598 Fragaria x ananassa HOM05D000559 ORTHO05D000596 6.4e-06 56.2 133 30.1
FAN24G1700 Fragaria x ananassa HOM05D000559 ORTHO05D000596 6.4e-06 56.2 85 35.3
Lj5g0005124 Lotus japonicus HOM05D000559 ORTHO05D000596 6.4e-06 56.2 122 30.3
MD17G1267100 Malus domestica HOM05D000559 ORTHO05D000596 6.4e-06 56.2 111 31.5
Phvul.007G113500 Phaseolus vulgaris HOM05D000559 ORTHO05D000596 6.4e-06 56.2 111 31.5
Psat6g112400 Pisum sativum HOM05D000559 ORTHO05D000596 6.4e-06 56.2 111 30.6
Potri.017G126300 Populus trichocarpa HOM05D000559 ORTHO05D000596 6.4e-06 56.2 111 31.5
RcHm_v2.0_Chr6g0249341 Rosa chinensis HOM05D000559 ORTHO05D000596 6.4e-06 56.2 111 31.5
Sabra17G0106000 Salix brachista HOM05D000559 ORTHO05D000596 6.4e-06 56.2 111 31.5
GSVIVG01018449001 Vitis vinifera HOM05D000559 ORTHO05D000596 6.4e-06 56.2 291 24.7
BcaC08g44992 Brassica carinata HOM05D002423 ORTHO05D002632 8.3e-06 55.8 79 38.0
C06p26210 Brassica napus HOM05D000559 ORTHO05D000596 8.3e-06 55.8 79 38.0
BolC6t37784H Brassica oleracea HOM05D000559 ORTHO05D000596 8.3e-06 55.8 79 38.0
Duzib205G1292 Durio zibethinus HOM05D000559 ORTHO05D000596 8.3e-06 55.8 125 29.6
Lalb_Chr06g0168801 Lupinus albus HOM05D000559 ORTHO05D000596 8.3e-06 55.8 98 32.7
Os08g0113100 Oryza sativa ssp. japonica HOM05D000559 ORTHO05D000596 8.3e-06 55.8 92 30.4
Sp5g21500 Schrenkiella parvula HOM05D000559 ORTHO05D000596 8.3e-06 55.8 111 33.3


User provided reference genes

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