Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.9e-28 128.6 71 100.0
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 4.9e-21 104.0 71 81.7
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 9.2e-20 99.8 71 78.9
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 9.2e-20 99.8 71 78.9
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 1.2e-19 99.4 71 78.9
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 1.2e-19 99.4 71 78.9
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 1.2e-19 99.4 71 78.9
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 1.2e-19 99.4 71 78.9
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.2e-19 99.4 71 78.9
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 1.2e-19 99.4 71 80.3
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.2e-19 99.4 71 78.9
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.6e-19 99.0 71 78.9
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 2.1e-19 98.6 71 80.3
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 2.1e-19 98.6 71 77.5
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 2.1e-19 98.6 71 80.3
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 2.7e-19 98.2 71 77.5
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 2.7e-19 98.2 71 80.3
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 2.7e-19 98.2 71 80.3
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 3.5e-19 97.8 71 77.5
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 3.5e-19 97.8 71 80.3
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 3.5e-19 97.8 71 80.3
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 4.6e-19 97.4 71 80.3
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 6.0e-19 97.1 71 78.9
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 6.0e-19 97.1 71 80.3
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 6.0e-19 97.1 71 78.9
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 7.8e-19 96.7 71 77.5
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 1.0e-18 96.3 71 76.1
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 1.0e-18 96.3 71 77.5
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.3e-18 95.9 90 66.7
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 1.7e-18 95.5 71 77.5
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.7e-18 95.5 71 77.5
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.7e-18 95.5 71 77.5
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 1.7e-18 95.5 71 77.5
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.7e-18 95.5 71 77.5
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.7e-18 95.5 71 77.5
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 2.3e-18 95.1 71 77.5
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 3.0e-18 94.7 71 78.9
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 3.0e-18 94.7 71 77.5
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 3.0e-18 94.7 71 76.1
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 3.0e-18 94.7 71 77.5
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.9e-18 94.4 71 76.1
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.9e-18 94.4 71 76.1
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 3.9e-18 94.4 93 61.3
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 3.9e-18 94.4 69 76.8
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.1e-18 94.0 71 77.5
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 5.1e-18 94.0 71 78.9
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 6.6e-18 93.6 71 76.1
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 6.6e-18 93.6 71 77.5
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.6e-18 93.6 71 77.5
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 6.6e-18 93.6 71 77.5
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 6.6e-18 93.6 71 77.5
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 8.6e-18 93.2 71 77.5
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 8.6e-18 93.2 71 74.6
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.1e-17 92.8 71 74.6
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.1e-17 92.8 71 74.6
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.1e-17 92.8 71 76.1
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 1.5e-17 92.4 68 76.5
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.5e-17 92.4 71 76.1
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 1.5e-17 92.4 71 76.1
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-17 92.0 68 76.5
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-17 92.0 68 76.5
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 1.9e-17 92.0 68 76.5
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 1.9e-17 92.0 68 76.5
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 1.9e-17 92.0 68 76.5
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 1.9e-17 92.0 68 79.4
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 2.5e-17 91.7 71 76.1
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 4.3e-17 90.9 66 75.8
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 4.3e-17 90.9 66 75.8
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 4.3e-17 90.9 71 76.1
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 4.3e-17 90.9 81 69.1
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 4.3e-17 90.9 71 77.5
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 4.3e-17 90.9 71 74.6
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 9.5e-17 89.7 71 73.2
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 9.5e-17 89.7 71 74.6
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 1.2e-16 89.4 71 73.2
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.6e-16 89.0 71 73.2
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.6e-16 89.0 71 77.5
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 2.1e-16 88.6 71 78.9
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.1e-16 88.6 70 72.9
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 2.8e-16 88.2 71 71.8
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 2.8e-16 88.2 80 67.5
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 3.6e-16 87.8 71 76.1
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 1.1e-15 86.3 71 74.6
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.4e-15 85.9 71 76.1
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 1.4e-15 85.9 66 77.3
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 1.4e-15 85.9 71 74.6
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 1.4e-15 85.9 71 74.6
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.4e-15 85.9 70 71.4
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.4e-15 85.9 71 71.8
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 2.3e-15 85.1 65 73.8
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 3.1e-15 84.7 71 73.2
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 5.2e-15 84.0 70 74.3
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 5.2e-15 84.0 67 71.6
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 5.2e-15 84.0 71 74.6
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 8.9e-15 83.2 72 70.8
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 1.5e-14 82.4 71 67.6
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 1.5e-14 82.4 71 74.6
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 1.5e-14 82.4 71 70.4
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 2.0e-14 82.0 69 69.6
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 2.6e-14 81.6 59 78.0
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 2.6e-14 81.6 71 73.2
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 2.6e-14 81.6 64 71.9
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 2.6e-14 81.6 71 74.6
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 3.4e-14 81.3 70 68.6
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 5.8e-14 80.5 68 69.1
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 5.8e-14 80.5 69 73.9
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 9.9e-14 79.7 80 63.8
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 9.9e-14 79.7 66 72.7
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 1.7e-13 79.0 67 68.7
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 3.7e-13 77.8 71 66.2
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 3.7e-13 77.8 71 66.2
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.7e-13 77.8 60 76.7
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 4.9e-13 77.4 60 76.7
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 1.6e-11 72.4 66 65.2
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 2.3e-10 68.6 66 69.7
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 3.9e-10 67.8 61 68.9
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 2.1e-08 62.0 71 60.6
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 2.8e-08 61.6 60 65.0
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 8.1e-08 60.1 48 72.9
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 1.8e-07 58.9 69 58.0
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 2.4e-07 58.5 46 76.1
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 5.2e-07 57.4 71 54.9
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.5e-06 55.8 61 60.7
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 2.6e-06 55.1 66 59.1


User provided reference genes

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