Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc41.42 Carica papaya HOM05D005592 ORTHO05D006067 3.7e-123 444.9 224 100.0
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 1.3e-16 90.9 75 60.0
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 2.5e-15 86.7 62 67.7
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 1.3e-14 84.3 62 71.0
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 2.8e-14 83.2 66 59.1
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 6.3e-14 82.0 62 66.1
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 6.3e-14 82.0 62 64.5
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 6.3e-14 82.0 62 64.5
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 8.2e-14 81.6 62 66.1
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 8.2e-14 81.6 62 66.1
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 8.2e-14 81.6 62 66.1
CSS0024281 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 1.1e-13 81.3 64 62.5
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 1.4e-13 80.9 62 66.1
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 1.8e-13 80.5 62 66.1
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 2.4e-13 80.1 62 62.9
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 3.1e-13 79.7 62 64.5
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 3.1e-13 79.7 67 58.2
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 3.1e-13 79.7 62 66.1
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 4.1e-13 79.3 62 62.9
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 4.1e-13 79.3 62 62.9
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 4.1e-13 79.3 62 61.3
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 6.9e-13 78.6 62 62.9
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 9.0e-13 78.2 62 64.5
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 9.0e-13 78.2 62 62.9
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 9.0e-13 78.2 62 62.9
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 9.0e-13 78.2 63 66.7
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 1.2e-12 77.8 65 58.5
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 1.2e-12 77.8 62 62.9
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 1.5e-12 77.4 62 61.3
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 1.5e-12 77.4 70 57.1
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 1.5e-12 77.4 62 61.3
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 2.6e-12 76.6 62 62.9
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 2.6e-12 76.6 62 58.1
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 3.4e-12 76.3 65 60.0
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 4.5e-12 75.9 67 55.2
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 1.3e-11 74.3 62 64.5
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 1.7e-11 73.9 63 57.1
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 1.7e-11 73.9 62 59.7
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 1.7e-11 73.9 62 59.7
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 2.2e-11 73.6 62 61.3
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 2.2e-11 73.6 62 61.3
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 3.8e-11 72.8 62 59.7
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 5.0e-11 72.4 61 57.4
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 5.0e-11 72.4 63 55.6
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 8.5e-11 71.6 62 59.7
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 1.4e-10 70.9 62 58.1
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 1.4e-10 70.9 62 59.7
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 2.5e-10 70.1 66 57.6
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 2.5e-10 70.1 53 66.0
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 3.2e-10 69.7 62 51.6
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 3.2e-10 69.7 62 58.1
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 3.2e-10 69.7 63 57.1
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 3.2e-10 69.7 62 53.2
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 4.2e-10 69.3 66 56.1
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 4.2e-10 69.3 62 54.8
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 1.2e-09 67.8 62 53.2
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 1.6e-09 67.4 66 51.5
Prupe.1G112300 Prunus persica HOM05D005592 ORTHO05D006067 1.6e-09 67.4 55 63.6
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 1.6e-09 67.4 62 54.8
Prupe.1G112400 Prunus persica HOM05D005592 ORTHO05D006067 2.1e-09 67.0 50 70.0
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 2.7e-09 66.6 63 54.0
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 4.6e-09 65.9 62 53.2
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 4.6e-09 65.9 62 54.8
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 6.1e-09 65.5 63 54.0
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 1.4e-08 64.3 62 51.6
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 2.3e-08 63.5 68 54.4
BcaC05g27807 Brassica carinata HOM05D005592 ORTHO05D006067 5.1e-08 62.4 68 54.4
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 5.1e-08 62.4 68 54.4
C05p38090 Brassica napus HOM05D005592 ORTHO05D006067 5.1e-08 62.4 68 54.4
BolC5t32537H Brassica oleracea HOM05D005592 ORTHO05D006067 5.1e-08 62.4 68 54.4
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 5.1e-08 62.4 68 54.4
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 6.7e-08 62.0 63 50.8
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 8.8e-08 61.6 62 51.6
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 1.1e-07 61.2 63 55.6
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 1.5e-07 60.8 62 51.6
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 2.0e-07 60.5 68 51.5
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 2.6e-07 60.1 68 52.9
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 3.3e-07 59.7 38 78.9
CDE04G0667 Ceratophyllum demersum HOM05D005592 ORTHO05D006067 4.4e-07 59.3 63 52.4
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 4.4e-07 59.3 62 50.0
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 4.4e-07 59.3 68 45.6
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 9.7e-07 58.2 63 46.0
Sp1g28850 Schrenkiella parvula HOM05D005592 ORTHO05D006067 9.7e-07 58.2 68 52.9
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 9.7e-07 58.2 68 47.1
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 1.7e-06 57.4 68 51.5
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 1.7e-06 57.4 64 43.8
AL8G14960 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 2.2e-06 57.0 68 51.5
AL8G14970 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 4.8e-06 55.8 63 52.4
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 6.3e-06 55.5 57 56.1
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 6.3e-06 55.5 58 46.6
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 8.2e-06 55.1 68 48.5


User provided reference genes

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