Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 4.2e-38 161.0 89 100.0
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.7e-34 149.1 86 93.0
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.7e-34 149.1 87 90.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.8e-34 148.3 86 93.0
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 4.8e-34 147.5 86 90.7
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 6.3e-34 147.1 86 90.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 8.2e-34 146.7 86 90.7
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.4e-33 146.0 86 90.7
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 1.8e-33 145.6 86 89.5
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 2.4e-33 145.2 86 90.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 3.1e-33 144.8 86 90.7
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.1e-33 144.4 86 90.7
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.1e-33 144.4 86 90.7
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 4.1e-33 144.4 86 91.9
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 5.3e-33 144.1 86 89.5
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 7.0e-33 143.7 86 89.5
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 9.1e-33 143.3 86 90.7
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 9.1e-33 143.3 86 88.4
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.2e-32 142.9 86 88.4
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.2e-32 142.9 86 88.4
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-32 142.9 84 90.5
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.6e-32 142.5 86 89.5
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.6e-32 142.5 86 89.5
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.6e-32 142.5 86 87.2
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.6e-32 142.5 86 89.5
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.6e-32 142.5 86 88.4
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 2.0e-32 142.1 86 89.5
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 2.6e-32 141.7 86 87.2
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.6e-32 141.7 86 88.4
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.6e-32 141.7 86 88.4
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 2.6e-32 141.7 86 87.2
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 3.5e-32 141.4 86 89.5
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 4.5e-32 141.0 86 87.2
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 5.9e-32 140.6 86 86.0
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 5.9e-32 140.6 86 86.0
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 5.9e-32 140.6 86 86.0
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 86.0
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 87.2
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 87.2
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 87.2
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 88.4
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 87.2
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 87.2
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 7.7e-32 140.2 86 88.4
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.0e-31 139.8 86 87.2
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.0e-31 139.8 86 87.2
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.3e-31 139.4 86 84.9
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 1.7e-31 139.0 89 87.6
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 2.2e-31 138.7 86 87.2
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 2.2e-31 138.7 86 87.2
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 2.2e-31 138.7 86 84.9
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 2.9e-31 138.3 86 84.9
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 2.9e-31 138.3 86 84.9
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.9e-31 138.3 91 86.8
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.9e-31 138.3 86 86.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 5.0e-31 137.5 85 85.9
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-31 137.5 86 89.5
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 5.0e-31 137.5 86 87.2
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 5.0e-31 137.5 91 84.6
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 6.5e-31 137.1 86 84.9
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 6.5e-31 137.1 86 86.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 6.5e-31 137.1 86 88.4
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.5e-31 137.1 86 88.4
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.5e-31 137.1 86 88.4
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.5e-31 137.1 86 88.4
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 6.5e-31 137.1 86 86.0
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.5e-31 136.7 86 88.4
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 8.5e-31 136.7 86 88.4
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 8.5e-31 136.7 86 88.4
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.1e-30 136.3 86 84.9
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.5e-30 136.0 92 82.6
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.9e-30 135.6 86 84.9
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.2e-30 134.8 86 88.4
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 4.2e-30 134.4 86 82.6
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 5.5e-30 134.0 86 82.6
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 9.4e-30 133.3 86 83.7
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 9.4e-30 133.3 86 83.7
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 9.4e-30 133.3 86 87.2
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 1.2e-29 132.9 86 83.7
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.2e-29 132.9 86 86.0
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.2e-29 132.9 86 81.4
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.1e-29 132.1 86 82.6
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 2.1e-29 132.1 86 87.2
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 2.1e-29 132.1 100 76.0
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.6e-29 131.3 86 81.4
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 3.6e-29 131.3 86 80.2
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 4.7e-29 131.0 86 84.9
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 4.7e-29 131.0 86 80.2
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.1e-29 130.6 84 86.9
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 1.8e-28 129.0 86 80.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.8e-28 129.0 86 80.2
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 1.8e-28 129.0 86 79.1
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 2.3e-28 128.6 86 84.9
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 4.0e-28 127.9 96 76.0
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 8.8e-28 126.7 109 68.8
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 4.4e-27 124.4 86 77.9
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.7e-27 124.0 86 77.9
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 7.5e-27 123.6 86 75.6
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.3e-26 120.6 86 80.2
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 8.3e-26 120.2 99 73.7
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 4.1e-25 117.9 86 73.3
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 9.1e-25 116.7 76 82.9
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.7e-24 115.2 66 92.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.7e-24 115.2 66 92.4
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-23 112.8 70 87.1
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-23 112.8 70 87.1
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.3e-23 112.8 70 87.1
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.5e-23 110.2 72 81.9
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.7e-21 104.4 70 85.7
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 8.0e-21 103.6 76 75.0
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 7.5e-19 97.1 66 83.3
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 7.0e-17 90.5 86 64.0
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.2e-16 89.7 86 62.8
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.0e-16 89.0 86 62.8
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 3.5e-16 88.2 86 61.6
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 3.5e-16 88.2 86 62.8
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 4.5e-16 87.8 86 61.6
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-15 86.3 86 62.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.3e-15 86.3 86 62.8
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.3e-15 86.3 86 61.6
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.5e-14 82.0 86 59.3
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 5.5e-14 80.9 83 60.2
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 9.5e-14 80.1 85 57.6
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.0e-12 76.6 48 87.5
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.2e-11 73.2 42 88.1
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.7e-10 69.3 107 44.9
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 2.3e-07 58.9 48 64.6


User provided reference genes

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