Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc40.53 Carica papaya HOM05D000004 ORTHO05D000563 5.1e-53 210.7 97 100.0
Cpa.g.sc39.101 Carica papaya HOM05D000004 ORTHO05D000563 5.8e-17 90.9 106 46.2
Cpa.g.sc60.53 Carica papaya HOM05D000004 ORTHO05D000563 2.3e-13 79.0 52 65.4
Cpa.g.sc4.120 Carica papaya HOM05D000004 ORTHO05D000563 1.6e-11 72.8 87 47.1
PGR004G1708 Punica granatum HOM05D000004 ORTHO05D000563 4.8e-11 71.2 52 55.8
PGR083G2791 Punica granatum HOM05D000004 ORTHO05D000563 8.2e-11 70.5 52 55.8
PGR031G2848 Punica granatum HOM05D000004 ORTHO05D000002 1.8e-10 69.3 52 53.8
PGR115G0001 Punica granatum HOM05D000004 ORTHO05D000002 1.8e-10 69.3 52 53.8
PGR119G1513 Punica granatum HOM05D000004 ORTHO05D000002 1.8e-10 69.3 52 53.8
PGR142G1811 Punica granatum HOM05D000004 ORTHO05D000002 1.8e-10 69.3 52 55.8
PGR025G0001 Punica granatum HOM05D000004 ORTHO05D000002 2.4e-10 68.9 52 53.8
PGR044G0113 Punica granatum HOM05D000004 ORTHO05D000563 2.4e-10 68.9 52 53.8
PGR044G1656 Punica granatum HOM05D000004 ORTHO05D000563 2.4e-10 68.9 52 53.8
PGR044G2607 Punica granatum HOM05D000004 ORTHO05D000002 2.4e-10 68.9 52 53.8
PGR052G0001 Punica granatum HOM05D000004 ORTHO05D000002 2.4e-10 68.9 52 53.8
PGR119G1563 Punica granatum HOM05D000004 ORTHO05D000563 2.4e-10 68.9 52 53.8
PGR139G0001 Punica granatum HOM05D000004 ORTHO05D000002 2.4e-10 68.9 60 50.0
THA.LOC104799780 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 2.4e-10 68.9 54 50.0
THA.LOC104806048 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 2.4e-10 68.9 54 50.0
Cpa.g.sc118.7 Carica papaya HOM05D000004 ORTHO05D000563 3.1e-10 68.6 52 53.8
Cpa.g.sc39.88 Carica papaya HOM05D000004 ORTHO05D000563 3.1e-10 68.6 51 56.9
PGR004G1184 Punica granatum HOM05D000004 ORTHO05D000563 3.1e-10 68.6 52 53.8
Cpa.g.sc154.5 Carica papaya HOM05D000004 ORTHO05D000563 4.1e-10 68.2 60 51.7
Cpa.g.sc40.46 Carica papaya HOM05D000004 ORTHO05D000563 4.1e-10 68.2 61 54.1
PGR102G2704 Punica granatum HOM05D000004 ORTHO05D000002 4.1e-10 68.2 52 53.8
Cpa.g.sc143.15 Carica papaya HOM05D000004 ORTHO05D000563 6.9e-10 67.4 52 53.8
Cpa.g.sc1785.1 Carica papaya HOM05D000004 ORTHO05D000563 6.9e-10 67.4 46 58.7
Cpa.g.sc203.12 Carica papaya HOM05D000004 ORTHO05D000563 6.9e-10 67.4 60 51.7
Cpa.g.sc3290.1 Carica papaya HOM05D000004 ORTHO05D000563 6.9e-10 67.4 52 53.8
Cpa.g.sc38.20 Carica papaya HOM05D000004 ORTHO05D000563 6.9e-10 67.4 52 53.8
Cpa.g.sc61.2 Carica papaya HOM05D000004 ORTHO05D000563 6.9e-10 67.4 79 40.5
PGR083G1623 Punica granatum HOM05D000004 ORTHO05D000002 6.9e-10 67.4 52 51.9
THA.LOC104821896 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 6.9e-10 67.4 54 48.1
Cpa.g.sc303.9 Carica papaya HOM05D000004 ORTHO05D000563 9.0e-10 67.0 64 48.4
Cpa.g.sc31.111 Carica papaya HOM05D000004 ORTHO05D000563 9.0e-10 67.0 65 49.2
Cpa.g.sc31.61 Carica papaya HOM05D000004 ORTHO05D000563 9.0e-10 67.0 43 67.4
Cpa.g.sc88.32 Carica papaya HOM05D000004 ORTHO05D000563 9.0e-10 67.0 60 51.7
SHI53384 Sapria himalayana HOM05D000004 ORTHO05D000563 9.0e-10 67.0 70 41.4
Cpa.g.sc1364.1 Carica papaya HOM05D000004 ORTHO05D000563 1.2e-09 66.6 52 53.8
SHI47494 Sapria himalayana HOM05D000004 ORTHO05D000563 1.2e-09 66.6 52 48.1
THA.LOC109116955 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 1.2e-09 66.6 46 58.7
THA.LOC109117128 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.2e-09 66.6 46 58.7
Atru.chr8.715 Acer truncatum HOM05D000004 ORTHO05D000563 1.5e-09 66.2 52 50.0
Cpa.g.sc1555.3 Carica papaya HOM05D000004 ORTHO05D000563 1.5e-09 66.2 48 56.2
SHI01378 Sapria himalayana HOM05D000004 ORTHO05D000563 1.5e-09 66.2 48 56.2
MSTRG.13863 Avicennia marina HOM05D000004 ORTHO05D000563 2.0e-09 65.9 52 53.8
MSTRG.20360 Avicennia marina HOM05D000004 ORTHO05D000002 2.0e-09 65.9 52 53.8
Cpa.g.sc143.9 Carica papaya HOM05D000004 ORTHO05D000563 2.0e-09 65.9 46 60.9
Cpa.g.sc154.9 Carica papaya HOM05D000004 ORTHO05D000563 2.0e-09 65.9 52 53.8
Cpa.g.sc445.2 Carica papaya HOM05D000004 ORTHO05D000563 2.0e-09 65.9 59 50.8
Cpa.g.sc645.1 Carica papaya HOM05D000004 ORTHO05D000563 2.0e-09 65.9 60 50.0
THA.LOC104807122 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 2.0e-09 65.9 53 52.8
CANSAT25G3060 Cannabis sativa HOM05D000004 ORTHO05D000563 2.6e-09 65.5 47 55.3
Cpa.g.sc2219.1 Carica papaya HOM05D000004 ORTHO05D000563 2.6e-09 65.5 71 42.3
Cpa.g.sc2811.1 Carica papaya HOM05D000004 ORTHO05D000563 2.6e-09 65.5 52 51.9
Cpa.g.sc44.39 Carica papaya HOM05D000004 ORTHO05D000563 2.6e-09 65.5 52 51.9
PGR004G2150 Punica granatum HOM05D000004 ORTHO05D000002 2.6e-09 65.5 44 59.1
PGR031G1605 Punica granatum HOM05D000004 ORTHO05D000002 2.6e-09 65.5 47 55.3
PGR031G3196 Punica granatum HOM05D000004 ORTHO05D000002 2.6e-09 65.5 47 55.3
PGR042G0073 Punica granatum HOM05D000004 ORTHO05D000002 2.6e-09 65.5 44 61.4
PGR083G2735 Punica granatum HOM05D000004 ORTHO05D000002 2.6e-09 65.5 47 55.3
SHI40013 Sapria himalayana HOM05D000004 ORTHO05D000563 2.6e-09 65.5 52 48.1
SHI44504 Sapria himalayana HOM05D000004 ORTHO05D000002 2.6e-09 65.5 70 41.4
SHI54925 Sapria himalayana HOM05D000004 ORTHO05D000563 2.6e-09 65.5 60 46.7
Cpa.g.sc2455.1 Carica papaya HOM05D000004 ORTHO05D000563 3.4e-09 65.1 51 54.9
PGR119G1621 Punica granatum HOM05D000004 ORTHO05D000563 3.4e-09 65.1 44 56.8
SHI53258 Sapria himalayana HOM05D000004 ORTHO05D000563 3.4e-09 65.1 52 48.1
Cpa.g.sc22.77 Carica papaya HOM05D000004 ORTHO05D000563 4.5e-09 64.7 48 56.2
Cpa.g.sc30.36 Carica papaya HOM05D000004 ORTHO05D000563 4.5e-09 64.7 51 52.9
Cpa.g.sc658.1 Carica papaya HOM05D000004 ORTHO05D000563 4.5e-09 64.7 49 55.1
SHI39813 Sapria himalayana HOM05D000004 ORTHO05D000563 4.5e-09 64.7 52 48.1
SHI40104 Sapria himalayana HOM05D000004 ORTHO05D000002 4.5e-09 64.7 52 48.1
SHI40836 Sapria himalayana HOM05D000004 ORTHO05D000563 4.5e-09 64.7 52 48.1
SHI47394 Sapria himalayana HOM05D000004 ORTHO05D000002 4.5e-09 64.7 52 48.1
SHI47627 Sapria himalayana HOM05D000004 ORTHO05D000002 4.5e-09 64.7 52 48.1
SHI47910 Sapria himalayana HOM05D000004 ORTHO05D000002 4.5e-09 64.7 52 48.1
SHI47923 Sapria himalayana HOM05D000004 ORTHO05D000563 4.5e-09 64.7 52 48.1
SHI48037 Sapria himalayana HOM05D000004 ORTHO05D000563 4.5e-09 64.7 52 48.1
SHI48187 Sapria himalayana HOM05D000004 ORTHO05D000002 4.5e-09 64.7 52 48.1
SHI49269 Sapria himalayana HOM05D000004 ORTHO05D000563 4.5e-09 64.7 52 48.1
SHI50247 Sapria himalayana HOM05D000004 ORTHO05D000563 4.5e-09 64.7 52 48.1
THA.LOC109116027 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 4.5e-09 64.7 54 48.1
Cpa.g.sc38.15 Carica papaya HOM05D000004 ORTHO05D000563 5.9e-09 64.3 52 51.9
Cpa.g.sc92.118 Carica papaya HOM05D000004 ORTHO05D000563 5.9e-09 64.3 46 60.9
SHI37899 Sapria himalayana HOM05D000004 ORTHO05D000002 5.9e-09 64.3 52 48.1
SHI44485 Sapria himalayana HOM05D000004 ORTHO05D000002 5.9e-09 64.3 52 46.2
THA.LOC104822353 Tarenaya hassleriana HOM05D000442 ORTHO05D001979 5.9e-09 64.3 51 47.1
Cpa.g.sc1555.2 Carica papaya HOM05D000004 ORTHO05D000563 7.6e-09 63.9 52 51.9
Cpa.g.sc181.6 Carica papaya HOM05D000004 ORTHO05D000563 7.6e-09 63.9 49 53.1
Cpa.g.sc210.11 Carica papaya HOM05D000004 ORTHO05D000563 7.6e-09 63.9 79 39.2
Cpa.g.sc28.156 Carica papaya HOM05D000004 ORTHO05D000563 7.6e-09 63.9 52 51.9
Cpa.g.sc778.1 Carica papaya HOM05D000004 ORTHO05D000563 7.6e-09 63.9 48 54.2
PGR004G2489 Punica granatum HOM05D000004 ORTHO05D000002 7.6e-09 63.9 44 56.8
SHI30189 Sapria himalayana HOM05D000004 ORTHO05D000563 7.6e-09 63.9 52 48.1
SHI54829 Sapria himalayana HOM05D000004 ORTHO05D000563 7.6e-09 63.9 52 48.1
Cpa.g.sc28.100 Carica papaya HOM05D000004 ORTHO05D000563 1.0e-08 63.5 49 53.1
PGR102G0770 Punica granatum HOM05D000004 ORTHO05D000002 1.0e-08 63.5 44 54.5
SHI37133 Sapria himalayana HOM05D000004 ORTHO05D000002 1.0e-08 63.5 52 48.1
SHI47695 Sapria himalayana HOM05D000004 ORTHO05D000002 1.0e-08 63.5 52 48.1
SHI51310 Sapria himalayana HOM05D000004 ORTHO05D000002 1.0e-08 63.5 52 48.1
Cpa.g.sc225.3 Carica papaya HOM05D000004 ORTHO05D000563 1.3e-08 63.2 51 51.0
SHI01700 Sapria himalayana HOM05D000004 ORTHO05D000563 1.3e-08 63.2 52 48.1
SHI50007 Sapria himalayana HOM05D000004 ORTHO05D000002 1.7e-08 62.8 52 46.2
THA.LOC109116513 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 1.7e-08 62.8 46 54.3
Cpa.g.sc154.1 Carica papaya HOM05D000004 ORTHO05D000563 2.2e-08 62.4 44 59.1
THA.LOC104818534 Tarenaya hassleriana HOM05D000004 ORTHO05D000563 2.2e-08 62.4 46 58.7
Atru.chr8.565 Acer truncatum HOM05D000004 ORTHO05D000563 2.9e-08 62.0 52 50.0
Cpa.g.sc1201.1 Carica papaya HOM05D000004 ORTHO05D000563 2.9e-08 62.0 54 51.9
Cpa.g.sc880.2 Carica papaya HOM05D000004 ORTHO05D000563 2.9e-08 62.0 71 40.8
SHI35363 Sapria himalayana HOM05D000004 ORTHO05D000002 2.9e-08 62.0 51 47.1
SHI43808 Sapria himalayana HOM05D000004 ORTHO05D000002 2.9e-08 62.0 54 50.0
Cpa.g.sc172.1 Carica papaya HOM05D000004 ORTHO05D000563 3.8e-08 61.6 47 55.3
Cpa.g.sc172.6 Carica papaya HOM05D000004 ORTHO05D000563 3.8e-08 61.6 49 51.0
Cpa.g.sc303.2 Carica papaya HOM05D000004 ORTHO05D000563 3.8e-08 61.6 48 54.2
Cpa.g.sc54.19 Carica papaya HOM05D000004 ORTHO05D000563 3.8e-08 61.6 52 50.0
Cpa.g.sc60.61 Carica papaya HOM05D000004 ORTHO05D000563 3.8e-08 61.6 51 49.0
Cpa.g.sc97.21 Carica papaya HOM05D000004 ORTHO05D000563 3.8e-08 61.6 46 54.3
SHI41943 Sapria himalayana HOM05D000004 ORTHO05D000002 3.8e-08 61.6 52 46.2
SHI45165 Sapria himalayana HOM05D000004 ORTHO05D000002 3.8e-08 61.6 52 46.2
SHI46737 Sapria himalayana HOM05D000004 ORTHO05D000002 3.8e-08 61.6 52 46.2
SHI54394 Sapria himalayana HOM05D000004 ORTHO05D000563 3.8e-08 61.6 51 47.1
Cpa.g.sc1083.1 Carica papaya HOM05D000004 ORTHO05D000563 5.0e-08 61.2 52 48.1
Cpa.g.sc143.13 Carica papaya HOM05D000004 ORTHO05D000563 5.0e-08 61.2 47 53.2
Cpa.g.sc56.54 Carica papaya HOM05D000004 ORTHO05D000563 5.0e-08 61.2 45 55.6
Cpa.g.sc6.80 Carica papaya HOM05D000004 ORTHO05D000563 5.0e-08 61.2 41 61.0
PGR102G1518 Punica granatum HOM05D000004 ORTHO05D000563 5.0e-08 61.2 43 58.1
QL10p037628 Quercus lobata HOM05D000004 ORTHO05D000002 5.0e-08 61.2 40 70.0
SHI39334 Sapria himalayana HOM05D000004 ORTHO05D000002 5.0e-08 61.2 52 44.2
SHI48841 Sapria himalayana HOM05D000004 ORTHO05D000002 5.0e-08 61.2 52 46.2
SHI49610 Sapria himalayana HOM05D000004 ORTHO05D000002 5.0e-08 61.2 52 46.2
SHI49845 Sapria himalayana HOM05D000004 ORTHO05D000563 5.0e-08 61.2 42 57.1
SHI54914 Sapria himalayana HOM05D000004 ORTHO05D009927 5.0e-08 61.2 52 46.2
Cpa.g.sc28.86 Carica papaya HOM05D000004 ORTHO05D000563 6.5e-08 60.8 45 55.6
SHI47347 Sapria himalayana HOM05D000004 ORTHO05D000563 6.5e-08 60.8 52 46.2
SHI47656 Sapria himalayana HOM05D000004 ORTHO05D000002 6.5e-08 60.8 52 46.2
Cpa.g.sc71.24 Carica papaya HOM05D000004 ORTHO05D000563 8.5e-08 60.5 49 49.0
QL07p027315 Quercus lobata HOM05D000004 ORTHO05D000002 8.5e-08 60.5 46 52.2
SHI47357 Sapria himalayana HOM05D000004 ORTHO05D000002 8.5e-08 60.5 51 45.1
SHI48591 Sapria himalayana HOM05D000004 ORTHO05D000002 8.5e-08 60.5 51 45.1
SHI51545 Sapria himalayana HOM05D000004 ORTHO05D000563 8.5e-08 60.5 52 46.2
Cpa.g.sc40.67 Carica papaya HOM05D000004 ORTHO05D000563 1.1e-07 60.1 49 53.1
Cpa.g.sc826.2 Carica papaya HOM05D000004 ORTHO05D000563 1.1e-07 60.1 47 53.2
Lj5g0019047 Lotus japonicus HOM05D000004 ORTHO05D000563 1.1e-07 60.1 45 51.1
Cpa.g.sc28.98 Carica papaya HOM05D000004 ORTHO05D000563 1.9e-07 59.3 52 48.1
Cpa.g.sc305.4 Carica papaya HOM05D000004 ORTHO05D000563 1.9e-07 59.3 42 57.1
Cpa.g.sc32.166 Carica papaya HOM05D000004 ORTHO05D000563 1.9e-07 59.3 49 51.0
Cpa.g.sc40.40 Carica papaya HOM05D000004 ORTHO05D000563 1.9e-07 59.3 41 56.1
SHI47629 Sapria himalayana HOM05D000004 ORTHO05D000563 1.9e-07 59.3 52 42.3
SHI50602 Sapria himalayana HOM05D000004 ORTHO05D000002 1.9e-07 59.3 50 46.0
TPR.G40552 Trifolium pratense HOM05D000004 ORTHO05D000563 1.9e-07 59.3 57 45.6
Cpa.g.sc251.2 Carica papaya HOM05D000004 ORTHO05D000563 2.5e-07 58.9 44 54.5
Cpa.g.sc28.117 Carica papaya HOM05D000004 ORTHO05D000563 2.5e-07 58.9 52 50.0
Cpa.g.sc38.75 Carica papaya HOM05D000004 ORTHO05D000563 2.5e-07 58.9 45 53.3
Cpa.g.sc31.28 Carica papaya HOM05D000004 ORTHO05D000563 3.2e-07 58.5 49 49.0
Cpa.g.sc978.1 Carica papaya HOM05D000004 ORTHO05D000563 3.2e-07 58.5 49 49.0
PGR031G3733 Punica granatum HOM05D000004 ORTHO05D000563 3.2e-07 58.5 43 53.5
Cpa.g.sc31.56 Carica papaya HOM05D000004 ORTHO05D000563 4.2e-07 58.2 43 53.5
SHI33683 Sapria himalayana HOM05D000004 ORTHO05D000563 4.2e-07 58.2 56 48.2
Cpa.g.sc134.12 Carica papaya HOM05D000004 ORTHO05D000563 5.5e-07 57.8 41 70.7
Cpa.g.sc0.188 Carica papaya HOM05D000004 ORTHO05D000563 7.2e-07 57.4 48 58.3
Cpa.g.sc1884.2 Carica papaya HOM05D000004 ORTHO05D000563 7.2e-07 57.4 45 53.3
SHI49185 Sapria himalayana HOM05D000004 ORTHO05D000002 7.2e-07 57.4 64 39.1
Cpa.g.sc28.155 Carica papaya HOM05D000004 ORTHO05D000563 9.3e-07 57.0 45 53.3
Cpa.g.sc30.31 Carica papaya HOM05D000004 ORTHO05D000563 9.3e-07 57.0 41 56.1
Cpa.g.sc484.1 Carica papaya HOM05D000004 ORTHO05D000563 9.3e-07 57.0 80 35.0
PGR142G0719 Punica granatum HOM05D000004 ORTHO05D000563 9.3e-07 57.0 44 47.7
Sp6g11770 Schrenkiella parvula HOM05D008327 ORTHO05D010589 9.3e-07 57.0 44 50.0
SHI32913 Sapria himalayana HOM05D000004 ORTHO05D000563 1.2e-06 56.6 56 44.6
SHI33287 Sapria himalayana HOM05D000004 ORTHO05D000563 1.2e-06 56.6 52 42.3
SHI40481 Sapria himalayana HOM05D000004 ORTHO05D000563 1.2e-06 56.6 44 50.0
Cpa.g.sc225.4 Carica papaya HOM05D000004 ORTHO05D000563 1.6e-06 56.2 48 45.8
TPR.G29503 Trifolium pratense HOM05D000004 ORTHO05D000002 1.6e-06 56.2 57 43.9
Cpa.g.sc35.67 Carica papaya HOM05D000004 ORTHO05D000563 2.1e-06 55.8 41 53.7
Cpa.g.sc79.55 Carica papaya HOM05D000004 ORTHO05D000563 2.1e-06 55.8 39 56.4
SHI44906 Sapria himalayana HOM05D000004 ORTHO05D000002 2.1e-06 55.8 44 47.7
SHI46107 Sapria himalayana HOM05D000004 ORTHO05D000563 2.1e-06 55.8 42 50.0
SHI46673 Sapria himalayana HOM05D000004 ORTHO05D000002 2.1e-06 55.8 51 43.1
Cpa.g.sc38.3 Carica papaya HOM05D000004 ORTHO05D000563 2.7e-06 55.5 49 46.9
SpUn0158_0010 Schrenkiella parvula HOM05D008612 ORTHO05D010584 3.6e-06 55.1 43 48.8
BolC9t56697H Brassica oleracea HOM05D008795 ORTHO05D027698 4.6e-06 54.7 44 47.7
Sed0009597 Sechium edule HOM05D010826 ORTHO05D013073 4.6e-06 54.7 44 50.0
Sp3g24530 Schrenkiella parvula HOM05D000004 ORTHO05D000563 6.1e-06 54.3 44 47.7
Sp3g26110 Schrenkiella parvula HOM05D008327 ORTHO05D000563 6.1e-06 54.3 44 47.7
Sp7g09650 Schrenkiella parvula HOM05D011239 ORTHO05D000563 6.1e-06 54.3 44 47.7
Sp5g18310 Schrenkiella parvula HOM05D008612 ORTHO05D000563 7.9e-06 53.9 43 46.5


User provided reference genes

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