Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1981.5 1008 100.0
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1439.9 1008 74.7
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1391.7 1030 71.2
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1384.0 991 73.6
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1378.2 967 75.1
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1372.5 984 74.0
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1370.5 952 74.2
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1370.1 1018 71.7
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1315.4 1032 69.7
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1313.1 945 72.6
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1303.1 982 69.2
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1300.4 1025 67.9
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1296.6 1017 68.5
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1295.0 933 72.6
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1282.7 977 69.3
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1273.5 1016 66.2
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1266.1 979 68.4
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1261.5 1037 66.7
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1261.5 1017 65.2
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1255.7 966 68.2
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1253.8 957 68.7
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1253.4 957 68.7
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1251.9 963 69.4
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1248.8 1012 66.7
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1242.3 1037 66.3
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1239.6 941 69.2
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1231.9 986 66.2
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1227.2 942 68.2
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1215.3 1020 63.2
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1214.1 975 67.2
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1212.2 1015 63.4
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1206.4 1015 63.4
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1205.7 1022 63.5
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1190.3 942 67.2
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1179.9 983 64.1
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1172.5 991 64.3
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1171.8 1041 61.9
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1166.8 1035 60.8
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1166.0 1035 60.7
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1165.2 1012 63.7
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1159.4 941 64.5
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1157.9 1035 60.4
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1153.3 983 63.4
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1151.3 1035 59.7
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1144.4 1002 61.3
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1129.4 953 63.9
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 0.0e+00 1124.8 983 62.2
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1123.2 995 61.5
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1117.1 922 64.3
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1114.8 922 64.2
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1111.3 861 66.8
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 0.0e+00 1110.1 959 62.6
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1106.3 958 62.3
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1105.1 1015 60.7
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 0.0e+00 1101.7 1016 60.6
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 0.0e+00 1088.2 1030 60.9
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 0.0e+00 1081.2 971 59.9
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.4e-310 1069.7 1002 59.2
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 1.3e-308 1063.1 947 59.8
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.6e-306 1056.2 980 59.8
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 5.1e-305 1051.2 1029 55.6
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 1.9e-304 1049.3 971 58.1
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 4.3e-304 1048.1 980 60.0
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.5e-301 1039.6 988 57.9
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 3.4e-301 1038.5 966 60.8
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 1.3e-300 1036.6 963 59.6
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 1.3e-300 1036.6 990 57.9
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 6.4e-300 1034.2 841 63.7
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 2.4e-299 1032.3 958 59.0
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 7.8e-298 1027.3 835 65.4
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 7.8e-298 1027.3 948 58.1
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 8.1e-295 1017.3 687 75.1
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 1.6e-290 1003.0 1025 53.8
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 9.0e-286 987.3 1010 54.4
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.9e-280 969.5 849 60.8
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 9.3e-275 950.7 851 58.5
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 7.4e-272 941.0 1045 52.1
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 7.4e-272 941.0 1045 52.1
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 2.1e-271 939.5 1042 51.5
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 2.1e-271 939.5 1018 53.4
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.2e-271 937.9 1044 51.9
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 6.2e-271 937.9 1052 51.7
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 7.6e-269 931.0 961 54.0
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 5.5e-267 924.9 1064 51.7
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 8.7e-265 917.5 962 53.6
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 3.3e-264 915.6 958 53.5
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 5.7e-264 914.8 1038 50.7
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 5.7e-264 914.8 1038 50.7
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.0e-261 906.4 770 60.3
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 6.5e-260 901.4 1040 51.2
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 3.2e-259 899.0 1043 50.4
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 1.0e-257 894.0 880 53.8
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 1.3e-257 893.6 1011 50.8
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.8e-257 893.3 1040 50.9
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.2e-251 872.5 913 53.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 8.2e-247 857.8 833 54.4
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 5.9e-245 851.7 765 58.3
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 2.5e-243 846.3 1040 49.1
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.3e-240 835.9 529 77.9
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 2.6e-237 826.2 542 75.1
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 6.3e-231 805.1 534 73.2
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.4e-222 777.3 995 46.2
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.0e-217 759.2 704 55.7
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.1e-203 714.5 644 57.5
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 7.1e-166 589.0 396 74.7
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 1.9e-158 564.3 736 48.4
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.3e-148 530.8 468 56.2
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 6.9e-145 519.2 477 63.9
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 1.1e-126 458.8 394 57.9
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 2.3e-116 424.5 406 64.0
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.9e-94 351.7 496 45.8
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.2e-76 290.4 312 48.7
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 3.2e-57 228.0 751 28.1
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 4.0e-52 211.1 285 47.7
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 3.2e-49 201.4 160 60.6
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 9.0e-44 183.3 375 32.3
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-42 179.5 375 32.3
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-42 179.5 375 32.0
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-42 179.5 375 32.0
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.9e-41 175.6 192 51.6
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.4e-28 132.9 389 26.2
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.3e-25 120.2 319 28.2
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 4.6e-24 117.9 396 27.3
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.2e-17 94.7 105 52.4
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.3e-15 89.0 303 28.1
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 8.8e-15 87.0 362 27.6
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.5e-14 86.3 82 58.5
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 4.5e-11 74.7 349 25.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.1e-09 70.1 149 29.5
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 4.2e-09 68.2 148 29.7
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 5.5e-09 67.8 62 58.1
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 1.1e-06 60.1 159 29.6
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 1.5e-06 59.7 89 34.8
ECA234G1825 Erigeron canadensis HOM05D002537 ORTHO05D002751 1.5e-06 59.7 128 30.5
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 2.6e-06 58.9 87 37.9
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 3.3e-06 58.5 128 31.2
Haze_06001 Corylus avellana HOM05D003725 ORTHO05D004294 4.4e-06 58.2 184 25.0
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 5.7e-06 57.8 159 28.9
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 5.7e-06 57.8 164 28.0
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 7.4e-06 57.4 94 35.1
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 9.7e-06 57.0 134 29.1
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 9.7e-06 57.0 140 26.4
MD13G1130000 Malus domestica HOM05D002537 ORTHO05D002751 9.7e-06 57.0 133 28.6
Mapoly0086s0081 Marchantia polymorpha HOM05D003725 ORTHO05D004294 9.7e-06 57.0 202 25.7
unitig_37.g12059 Utricularia gibba HOM05D003725 ORTHO05D004294 9.7e-06 57.0 184 28.3


User provided reference genes

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