Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc397.8 Carica papaya HOM05D001207 ORTHO05D009015 8.2e-235 816.6 394 100.0
CiPaw.16G117200 Carya illinoinensis HOM05D001207 ORTHO05D009015 1.5e-74 284.3 152 87.5
Nn8g39732 Nelumbo nucifera HOM05D001207 ORTHO05D009015 5.6e-74 282.3 152 88.8
Manes.14G139700 Manihot esculenta HOM05D001207 ORTHO05D009015 1.8e-72 277.3 151 87.4
Cfa020877 Carpinus fangiana HOM05D001207 ORTHO05D009015 4.0e-72 276.2 152 88.8
Haze_19308 Corylus avellana HOM05D001207 ORTHO05D009015 4.0e-72 276.2 152 88.2
Ciclev10007794m.g Citrus clementina HOM05D001207 ORTHO05D009015 1.5e-71 274.2 151 86.8
GSVIVG01001035001 Vitis vinifera HOM05D001207 ORTHO05D009015 1.5e-71 274.2 151 86.8
QL02p091447 Quercus lobata HOM05D001207 ORTHO05D009015 2.6e-71 273.5 152 85.5
Prupe.7G253500 Prunus persica HOM05D001207 ORTHO05D009015 3.4e-71 273.1 151 84.8
Gohir.A06G048800 Gossypium hirsutum HOM05D001207 ORTHO05D009015 9.8e-71 271.6 152 84.9
Gorai.010G054600 Gossypium raimondii HOM05D001207 ORTHO05D009015 1.3e-70 271.2 152 84.2
Duzib168G0412 Durio zibethinus HOM05D001207 ORTHO05D009015 3.7e-70 269.6 152 85.5
Thecc.09G142600 Theobroma cacao HOM05D001207 ORTHO05D009015 3.7e-70 269.6 152 84.9
CSS0026722 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 1.1e-69 268.1 152 84.2
CSS0029501 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 1.1e-69 268.1 152 84.2
Gohir.D06G048500 Gossypium hirsutum HOM05D001207 ORTHO05D009015 1.1e-69 268.1 152 83.6
TWI34G1792 Tripterygium wilfordii HOM05D001207 ORTHO05D009015 1.9e-69 267.3 151 86.1
CANSAT11G0601 Cannabis sativa HOM05D001207 ORTHO05D009015 2.4e-69 266.9 152 84.2
Dinv42907 Davidia involucrata HOM05D001207 ORTHO05D009015 3.2e-69 266.5 152 84.9
Dinv43194 Davidia involucrata HOM05D001207 ORTHO05D009015 3.2e-69 266.5 152 84.9
Atru.chr7.251 Acer truncatum HOM05D001207 ORTHO05D009015 7.0e-69 265.4 151 82.8
Actinidia38703 Actinidia chinensis HOM05D001207 ORTHO05D009015 9.2e-69 265.0 151 84.1
Potri.018G113400 Populus trichocarpa HOM05D001207 ORTHO05D009015 2.0e-68 263.8 151 80.8
ATR0629G027 Amborella trichopoda HOM05D001207 ORTHO05D009015 4.6e-68 262.7 152 83.6
Eucgr.C00416 Eucalyptus grandis HOM05D001207 ORTHO05D009015 4.6e-68 262.7 152 80.9
arahy.Tifrunner.gnm1.ann1.HFL4GJ Arachis hypogaea HOM05D001207 ORTHO05D009015 7.8e-68 261.9 152 80.9
arahy.Tifrunner.gnm1.ann1.TBA1JX Arachis hypogaea HOM05D001207 ORTHO05D009015 7.8e-68 261.9 152 80.9
COL.COLO4_24082 Corchorus olitorius HOM05D001207 ORTHO05D009015 7.8e-68 261.9 152 82.9
PGR142G3550 Punica granatum HOM05D001207 ORTHO05D009015 7.8e-68 261.9 152 82.9
CAN.G551.23 Capsicum annuum HOM05D001207 ORTHO05D009015 1.7e-67 260.8 151 82.1
Aqoxy7G02296 Aquilegia oxysepala HOM05D001207 ORTHO05D009015 2.3e-67 260.4 155 80.6
FvH4_1g01570 Fragaria vesca HOM05D000238 ORTHO05D009015 2.3e-67 260.4 152 80.9
FAN19G3000 Fragaria x ananassa HOM05D001207 ORTHO05D009015 2.3e-67 260.4 152 80.9
MD02G1012500 Malus domestica HOM05D001207 ORTHO05D009015 2.3e-67 260.4 143 86.0
FAN26G2247 Fragaria x ananassa HOM05D001207 ORTHO05D009015 3.0e-67 260.0 152 80.3
RcHm_v2.0_Chr2g0086531 Rosa chinensis HOM05D001207 ORTHO05D009015 3.9e-67 259.6 152 80.3
Rhsim03G0254100 Rhododendron simsii HOM05D001207 ORTHO05D009015 6.6e-67 258.8 152 82.2
Lj9A710G64 Lonicera japonica HOM05D001207 ORTHO05D009015 8.6e-67 258.5 151 82.1
TAR636G2435 Trochodendron aralioides HOM05D001207 ORTHO05D009015 8.6e-67 258.5 151 83.4
FAN23G1325 Fragaria x ananassa HOM05D001207 ORTHO05D009015 1.1e-66 258.1 152 79.6
Sabra18G0096400 Salix brachista HOM05D000238 ORTHO05D001889 1.5e-66 257.7 143 83.2
Ah.11g040880 Amaranthus hybridus HOM05D001207 ORTHO05D009015 1.9e-66 257.3 151 81.5
PSO017G4960 Papaver somniferum HOM05D001207 ORTHO05D009015 1.9e-66 257.3 152 80.9
TPR.G22801 Trifolium pratense HOM05D001207 ORTHO05D009015 2.5e-66 256.9 151 81.5
ClCG11G003640 Citrullus lanatus HOM05D001207 ORTHO05D009015 4.3e-66 256.1 151 80.8
vmacro06110 Vaccinium macrocarpon HOM05D001207 ORTHO05D009015 7.3e-66 255.4 152 80.3
MELO3C004452.2 Cucumis melo HOM05D001207 ORTHO05D009015 9.5e-66 255.0 152 78.9
AUR62041441 Chenopodium quinoa HOM05D001207 ORTHO05D009015 1.2e-65 254.6 151 81.5
AUR62043763 Chenopodium quinoa HOM05D001207 ORTHO05D009015 1.2e-65 254.6 151 81.5
Sed0001389 Sechium edule HOM05D001207 ORTHO05D009015 1.6e-65 254.2 152 79.6
BolC8t48045H Brassica oleracea HOM05D001207 ORTHO05D009015 2.1e-65 253.8 159 76.1
Oeu040777.3 Olea europaea HOM05D001207 ORTHO05D009015 2.1e-65 253.8 152 80.3
AUR62011265 Chenopodium quinoa HOM05D001207 ORTHO05D009015 2.8e-65 253.4 151 80.8
CsaV3_2G003460 Cucumis sativus L. HOM05D001207 ORTHO05D009015 2.8e-65 253.4 152 78.3
BcaB04g18058 Brassica carinata HOM05D001207 ORTHO05D009015 3.6e-65 253.1 152 78.3
Ca_03887_v3 Cicer arietinum L. HOM05D001207 ORTHO05D009015 3.6e-65 253.1 152 79.6
A08p09620 Brassica napus HOM05D001207 ORTHO05D009015 4.7e-65 252.7 152 78.3
BraA08t32959Z Brassica rapa HOM05D001207 ORTHO05D009015 4.7e-65 252.7 152 78.3
BcaC07g37674 Brassica carinata HOM05D001207 ORTHO05D009015 6.2e-65 252.3 152 77.6
ECA234G4327 Erigeron canadensis HOM05D001207 ORTHO05D009015 8.0e-65 251.9 151 79.5
Sp7g07210 Schrenkiella parvula HOM05D001207 ORTHO05D009015 1.4e-64 251.1 152 77.0
FAN28G1069 Fragaria x ananassa HOM05D000238 ORTHO05D009015 1.8e-64 250.8 143 82.5
Lalb_Chr23g0275791 Lupinus albus HOM05D001207 ORTHO05D009015 1.8e-64 250.8 152 78.3
Lsat_1_v5_gn_5_90580 Lactuca sativa HOM05D001207 ORTHO05D009015 2.3e-64 250.4 151 78.1
VMungo1309G0472 Vigna mungo HOM05D001207 ORTHO05D009015 2.3e-64 250.4 152 78.3
Medtr2g461290 Medicago truncatula HOM05D001207 ORTHO05D009015 5.2e-64 249.2 151 79.5
SGA_v2.0_scaffold183G39863 Striga asiatica HOM05D001207 ORTHO05D009015 5.2e-64 249.2 152 78.9
Glyma.15G203100 Glycine max HOM05D001207 ORTHO05D009015 6.8e-64 248.8 152 77.6
Glyma.09G096800 Glycine max HOM05D001207 ORTHO05D009015 8.9e-64 248.4 152 77.6
Solyc12g010380.3 Solanum lycopersicum HOM05D001207 ORTHO05D009015 1.2e-63 248.1 151 78.1
Sopen12g005390 Solanum pennellii HOM05D001207 ORTHO05D009015 1.2e-63 248.1 151 78.1
AT5G35170 Arabidopsis thaliana HOM05D001207 ORTHO05D009015 1.5e-63 247.7 152 75.7
Lj5g0002827 Lotus japonicus HOM05D001207 ORTHO05D009015 1.5e-63 247.7 151 75.5
MSTRG.26312 Avicennia marina HOM05D001207 ORTHO05D009015 2.0e-63 247.3 152 78.3
Carub.0007s3100 Capsella rubella HOM05D001207 ORTHO05D009015 2.0e-63 247.3 152 76.3
Thhalv10003444m.g Eutrema salsugineum HOM05D001207 ORTHO05D009015 2.0e-63 247.3 152 75.0
CARHR217250 Cardamine hirsuta HOM05D001207 ORTHO05D009015 3.4e-63 246.5 151 76.2
Peaxi162Scf00177g00814 Petunia axillaris HOM05D001207 ORTHO05D009015 3.4e-63 246.5 172 72.1
AL7G44010 Arabidopsis lyrata HOM05D001207 ORTHO05D009015 4.4e-63 246.1 152 75.0
HPP92_003923 Vanilla planifolia HOM05D001207 ORTHO05D002396 4.4e-63 246.1 152 77.6
Aa31sc222G100 Aethionema arabicum HOM05D001207 ORTHO05D009015 5.8e-63 245.7 152 75.0
Phvul.009G208900 Phaseolus vulgaris HOM05D001207 ORTHO05D009015 5.8e-63 245.7 152 75.7
Nitab4.5_0001751g0080 Nicotiana tabacum HOM05D001207 ORTHO05D009015 1.7e-62 244.2 145 80.0
Nitab4.5_0005330g0050 Nicotiana tabacum HOM05D001207 ORTHO05D009015 2.9e-62 243.4 156 76.3
CDE10G0689 Ceratophyllum demersum HOM05D001207 ORTHO05D009015 3.2e-61 240.0 152 74.3
Migut.K00366 Erythranthe guttata HOM05D001207 ORTHO05D009015 3.2e-61 240.0 153 77.8
Cc06_g07370 Coffea canephora HOM05D001207 ORTHO05D009015 2.1e-60 237.3 143 78.3
unitig_62.g23479 Utricularia gibba HOM05D001207 ORTHO05D009015 1.7e-59 234.2 147 77.6
EL10Ac8g18828 Beta vulgaris HOM05D001207 ORTHO05D009015 2.3e-59 233.8 164 71.3
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 3.9e-59 233.0 154 73.4
Os08g0288200 Oryza sativa ssp. japonica HOM05D001207 ORTHO05D009015 5.0e-59 232.6 151 71.5
SEGI_19852 Sequoiadendron giganteum HOM05D001207 ORTHO05D009015 6.8e-56 222.2 152 67.8
Zm00001eb177670 Zea mays HOM05D001207 ORTHO05D009015 6.8e-56 222.2 151 68.9
Mapoly0139s0019 Marchantia polymorpha HOM05D001207 ORTHO05D009015 2.1e-49 200.7 153 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1402 Anthoceros agrestis HOM05D001207 ORTHO05D009015 8.1e-49 198.7 147 63.3
Pp3c23_18090 Physcomitrium patens HOM05D001207 ORTHO05D009015 4.6e-44 183.0 152 57.9
Pp3c23_18091 Physcomitrium patens HOM05D001207 ORTHO05D009015 1.3e-43 181.4 151 57.6
SMO356G0649 Selaginella moellendorffii HOM05D001207 ORTHO05D009015 1.9e-42 177.6 150 55.3
CBR_g41085 Chara braunii HOM05D001207 ORTHO05D009015 2.8e-41 173.7 156 54.5
Psat1g022840 Pisum sativum HOM05D001207 ORTHO05D009015 1.5e-39 167.9 105 79.0
DCAR_018904 Daucus carota HOM05D001207 ORTHO05D009015 5.4e-29 132.9 97 67.0
PRCOL_00002653 Prasinoderma coloniale HOM05D001207 ORTHO05D009015 6.0e-20 102.8 139 38.8
Lsat_1_v5_gn_6_30540 Lactuca sativa HOM05D001207 ORTHO05D009015 1.6e-17 94.7 88 56.8
MCO16G216 Micromonas commoda HOM05D001207 ORTHO05D009015 4.0e-16 90.1 143 35.7
Sc08g0004930 Simmondsia chinensis HOM05D001207 ORTHO05D009015 2.0e-15 87.8 50 82.0
DCAR_021502 Daucus carota HOM05D001207 ORTHO05D009015 5.5e-13 79.7 50 72.0


User provided reference genes

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