Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc391.2 Carica papaya HOM05D004313 ORTHO05D005036 7.3e-153 543.9 279 100.0
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 1.4e-76 290.4 172 87.2
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 4.2e-76 288.9 173 87.9
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 7.9e-75 284.6 172 86.0
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 3.0e-74 282.7 227 68.3
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 3.9e-74 282.3 173 86.7
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 8.8e-74 281.2 225 68.4
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 8.8e-74 281.2 172 86.0
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 1.5e-73 280.4 226 68.6
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 1.5e-73 280.4 172 84.9
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.5e-73 280.4 225 70.2
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 2.0e-73 280.0 173 84.4
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 2.6e-73 279.6 225 67.6
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 2.6e-73 279.6 225 67.6
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 2.6e-73 279.6 172 82.6
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 3.3e-73 279.3 173 84.4
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 3.3e-73 279.3 173 84.4
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 5.7e-73 278.5 174 82.8
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 5.7e-73 278.5 172 84.3
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 1.3e-72 277.3 225 67.1
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 1.3e-72 277.3 225 67.1
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 1.3e-72 277.3 225 67.1
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.7e-72 276.9 225 69.3
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 2.2e-72 276.6 172 83.7
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 2.8e-72 276.2 172 83.1
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 2.8e-72 276.2 172 83.1
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 2.8e-72 276.2 172 83.1
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 2.8e-72 276.2 172 83.7
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 4.8e-72 275.4 172 80.8
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 4.8e-72 275.4 172 81.4
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 4.8e-72 275.4 172 84.3
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 4.8e-72 275.4 172 83.1
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 6.3e-72 275.0 172 80.8
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 6.3e-72 275.0 172 80.8
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 6.3e-72 275.0 172 83.1
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 6.3e-72 275.0 172 83.1
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 8.2e-72 274.6 173 83.2
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 8.2e-72 274.6 192 74.0
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 1.1e-71 274.2 172 82.6
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.4e-71 273.9 192 74.0
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 1.8e-71 273.5 172 80.2
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 1.8e-71 273.5 217 69.6
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.8e-71 273.5 172 82.0
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 2.4e-71 273.1 172 80.2
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 2.4e-71 273.1 172 84.3
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 2.4e-71 273.1 173 82.7
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 3.1e-71 272.7 187 77.0
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 4.1e-71 272.3 172 84.3
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 5.3e-71 271.9 172 82.6
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 6.9e-71 271.6 172 82.6
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 9.1e-71 271.2 225 64.9
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 9.1e-71 271.2 172 81.4
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 9.1e-71 271.2 172 83.1
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 1.2e-70 270.8 172 83.7
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 1.2e-70 270.8 172 81.4
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 1.2e-70 270.8 225 68.4
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 2.0e-70 270.0 225 64.9
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 2.0e-70 270.0 172 80.8
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 2.6e-70 269.6 173 80.9
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 2.6e-70 269.6 172 81.4
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 2.6e-70 269.6 172 82.0
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 7.7e-70 268.1 225 65.3
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 7.7e-70 268.1 172 82.6
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 1.3e-69 267.3 172 82.0
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 1.7e-69 266.9 172 82.6
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 1.7e-69 266.9 172 82.6
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 2.2e-69 266.5 172 79.1
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 3.8e-69 265.8 172 79.1
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 5.0e-69 265.4 225 63.6
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 5.0e-69 265.4 172 82.0
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 6.5e-69 265.0 172 80.8
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 8.5e-69 264.6 172 80.8
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 2.5e-68 263.1 172 80.2
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 2.5e-68 263.1 172 81.4
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 5.5e-68 261.9 173 78.0
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 7.2e-68 261.5 173 78.6
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 9.4e-68 261.2 177 80.2
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 1.2e-67 260.8 173 77.5
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 2.1e-67 260.0 220 66.4
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 2.7e-67 259.6 173 78.6
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.7e-67 259.6 174 77.6
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 4.7e-67 258.8 173 77.5
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 6.1e-67 258.5 172 79.1
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 7.9e-67 258.1 173 77.5
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 7.9e-67 258.1 173 77.5
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 1.0e-66 257.7 173 76.3
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.0e-66 257.7 173 79.2
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 2.3e-66 256.5 173 76.9
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 2.3e-66 256.5 173 76.9
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 5.2e-66 255.4 162 83.3
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 2.6e-65 253.1 172 76.2
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 2.6e-65 253.1 173 75.7
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 5.7e-65 251.9 187 70.1
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 9.7e-65 251.1 173 75.1
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 1.7e-64 250.4 172 75.6
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 8.2e-64 248.1 169 77.5
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 1.4e-63 247.3 172 76.2
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 1.8e-63 246.9 169 75.7
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 2.4e-63 246.5 172 74.4
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 5.3e-63 245.4 172 73.8
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 2.6e-62 243.0 172 76.2
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 7.7e-62 241.5 172 75.6
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 1.1e-60 237.7 173 72.3
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.5e-60 237.3 172 74.4
CDE05G2166 Ceratophyllum demersum HOM05D004313 ORTHO05D005036 7.2e-60 235.0 172 70.9
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 2.7e-59 233.0 172 69.2
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 8.0e-59 231.5 173 69.9
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 5.7e-57 225.3 143 79.7
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 1.3e-56 224.2 176 65.3
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 9.1e-55 218.0 175 66.9
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 1.6e-54 217.2 187 61.0
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 2.0e-54 216.9 209 58.4
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 4.2e-52 209.1 194 57.7
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 2.7e-51 206.5 172 64.5
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 2.3e-50 203.4 187 57.8
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 2.8e-48 196.4 122 81.1
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 4.7e-43 179.1 172 54.7
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 6.3e-40 168.7 173 59.5
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 4.0e-34 149.4 211 40.3
AagrBONN_evm.TU.Sc2ySwM_117.3833 Anthoceros agrestis HOM05D004313 ORTHO05D005036 2.0e-33 147.1 192 45.3
Mapoly0187s0007 Marchantia polymorpha HOM05D004313 ORTHO05D005036 3.7e-32 142.9 215 36.3
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 1.7e-29 134.0 173 45.1
SEGI_31090 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 6.2e-27 125.6 85 67.1
Haze_06373 Corylus avellana HOM05D004313 ORTHO05D005036 4.6e-22 109.4 73 80.8
MELO3C035435.2 Cucumis melo HOM05D004313 ORTHO05D005036 5.2e-18 95.9 52 88.5
MELO3C031896.2 Cucumis melo HOM05D004313 ORTHO05D005036 4.1e-15 86.3 79 58.2
Cre02.g097250 Chlamydomonas reinhardtii HOM05D004313 ORTHO05D005036 3.0e-13 80.1 221 30.3
HanXRQChr04g0111761 Helianthus annuus HOM05D004313 ORTHO05D005036 1.1e-12 78.2 62 64.5
HanXRQChr12g0381491 Helianthus annuus HOM05D004313 ORTHO05D005036 1.1e-12 78.2 62 64.5
HanXRQChr15g0485871 Helianthus annuus HOM05D004313 ORTHO05D005036 2.5e-12 77.0 50 78.0
PRCOL_00006613 Prasinoderma coloniale HOM05D004313 ORTHO05D005036 3.1e-10 70.1 149 30.2
HanXRQChr09g0243671 Helianthus annuus HOM05D004313 ORTHO05D005036 3.8e-08 63.2 79 50.6
HPP92_025645 Vanilla planifolia HOM05D004313 ORTHO05D005036 3.8e-08 63.2 78 52.6
Cfa021668 Carpinus fangiana HOM05D004313 ORTHO05D005036 6.4e-08 62.4 157 28.7
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 2.7e-06 57.0 175 28.0
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 7.8e-06 55.5 137 31.4
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 7.8e-06 55.5 137 31.4


User provided reference genes

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