Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 0.0e+00 1426.0 817 100.0
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 2.3e-42 178.3 825 30.9
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.6e-38 165.6 841 30.0
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.7e-38 164.9 1016 28.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 4.6e-38 164.1 846 30.4
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 6.0e-38 163.7 838 27.0
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 5.6e-36 157.1 882 30.0
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.1e-35 155.2 845 34.2
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.1e-34 151.4 269 43.9
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 6.8e-34 150.2 880 29.8
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.2e-32 145.2 307 45.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.9e-31 142.1 851 27.1
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.4e-31 140.6 848 29.0
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 9.2e-31 139.8 840 31.2
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.5e-30 137.9 317 38.8
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 6.0e-30 137.1 854 29.9
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.0e-29 136.3 875 28.2
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.3e-29 136.0 298 39.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 3.0e-29 134.8 823 28.1
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 5.1e-29 134.0 255 40.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.1e-29 134.0 312 38.1
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 6.6e-29 133.7 832 25.2
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 6.6e-29 133.7 824 28.9
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 8.6e-29 133.3 875 27.8
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 8.6e-29 133.3 257 40.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.5e-28 132.5 305 37.0
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.3e-28 131.3 272 40.4
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 4.3e-28 131.0 231 41.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 5.6e-28 130.6 278 38.5
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 7.3e-28 130.2 238 48.3
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.1e-27 128.6 335 37.9
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.8e-27 128.3 330 35.5
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.2e-27 127.1 236 40.3
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.1e-26 126.3 254 40.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.1e-26 124.8 271 38.4
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.1e-26 124.8 325 34.8
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.5e-25 122.5 348 35.9
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.4e-25 121.3 835 27.1
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 7.6e-25 120.2 140 50.7
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 7.6e-25 120.2 321 33.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-24 119.0 823 26.1
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.7e-24 119.0 817 27.2
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.2e-24 118.6 235 39.6
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 3.8e-24 117.9 320 33.8
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.8e-24 117.9 246 39.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 3.8e-24 117.9 227 37.9
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 4.9e-24 117.5 326 35.9
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 4.9e-24 117.5 221 42.5
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 8.4e-24 116.7 844 27.3
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.1e-23 116.3 301 38.5
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 4.2e-23 114.4 270 37.8
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 7.1e-23 113.6 293 36.9
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 7.1e-23 113.6 236 39.8
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.2e-22 112.8 669 26.9
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-22 112.5 313 36.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.6e-22 112.5 285 36.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 2.1e-22 112.1 342 35.1
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 6.0e-22 110.5 270 38.9
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 6.0e-22 110.5 297 41.4
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-21 109.4 313 36.1
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.3e-21 109.4 829 24.8
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.7e-21 109.0 299 34.8
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.3e-21 108.6 231 39.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 3.0e-21 108.2 229 38.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 3.0e-21 108.2 285 35.1
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 3.9e-21 107.8 131 51.1
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 5.1e-21 107.5 868 24.1
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 5.1e-21 107.5 215 40.0
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 6.6e-21 107.1 335 33.4
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.1e-20 106.3 829 24.2
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.5e-20 105.9 309 38.5
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 2.5e-20 105.1 273 33.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-20 105.1 343 32.9
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-20 105.1 343 32.9
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-20 105.1 168 42.9
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.5e-20 105.1 168 42.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.5e-20 105.1 306 30.4
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 3.3e-20 104.8 343 31.5
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 3.3e-20 104.8 343 31.5
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.3e-20 104.8 342 33.0
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 5.6e-20 104.0 240 35.8
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 9.6e-20 103.2 289 33.6
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 9.6e-20 103.2 298 38.6
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.3e-19 102.8 318 34.0
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.3e-19 102.8 298 38.6
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 1.6e-19 102.4 316 36.1
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.8e-19 101.7 328 32.0
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 3.6e-19 101.3 824 24.8
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 4.8e-19 100.9 322 33.9
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.1e-18 99.8 220 39.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.1e-18 99.8 266 33.8
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.1e-18 99.8 855 26.4
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.8e-18 99.0 271 33.2
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.0e-18 97.8 283 34.3
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 5.3e-18 97.4 818 24.6
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.0e-18 96.7 273 32.2
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 9.0e-18 96.7 259 32.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 9.0e-18 96.7 227 35.2
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 2.0e-17 95.5 324 37.0
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.0e-17 95.5 274 35.8
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.6e-17 95.1 128 50.8
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 2.6e-17 95.1 153 44.4
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 5.8e-17 94.0 362 32.0
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.8e-16 91.3 317 30.9
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 4.9e-16 90.9 301 32.6
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.4e-16 90.5 321 30.2
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.2e-15 87.8 129 48.1
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 7.1e-15 87.0 136 45.6
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.2e-14 86.3 281 30.6
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.6e-14 85.9 142 41.5
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 3.5e-14 84.7 227 33.9
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 6.0e-14 84.0 332 29.8
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 7.9e-14 83.6 315 27.9
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.0e-13 81.6 322 31.7
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 3.0e-13 81.6 358 33.0
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 6.7e-13 80.5 151 41.7
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.9e-12 79.0 238 32.4
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 3.3e-12 78.2 279 29.0
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.3e-12 78.2 208 35.6
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 5.6e-12 77.4 258 31.8
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.6e-11 75.9 233 33.5
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.6e-11 75.9 724 24.3
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 2.1e-11 75.5 236 31.4
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 2.8e-11 75.1 323 31.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.6e-11 74.7 865 24.4
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 4.8e-11 74.3 879 27.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 6.2e-11 73.9 323 29.7
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.1e-10 71.6 270 30.4
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.0e-10 71.2 158 37.3
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 5.3e-10 70.9 121 36.4
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 9.0e-10 70.1 331 28.4
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.0e-10 70.1 852 25.1
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.2e-09 69.7 121 36.4
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 4.5e-09 67.8 315 26.3
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 5.8e-09 67.4 39 82.1
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 9.9e-09 66.6 314 28.0
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.3e-08 66.2 57 57.9
Duzib128G1713 Durio zibethinus HOM05D004299 ORTHO05D003557 4.9e-08 64.3 134 37.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.4e-07 62.8 112 36.6
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.9e-07 62.4 39 71.8
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 3.2e-07 61.6 103 43.7
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 5.5e-07 60.8 124 37.1
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 7.1e-07 60.5 98 41.8
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.2e-06 59.7 113 41.6
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.2e-06 59.7 36 80.6
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.2e-06 59.7 36 80.6
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.6e-06 59.3 113 40.7
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 3.5e-06 58.2 253 26.1
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 3.5e-06 58.2 223 29.1
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 7.9e-06 57.0 342 28.4
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 7.9e-06 57.0 40 62.5


User provided reference genes

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