Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 7.4e-112 407.1 194 100.0
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.7e-66 255.0 192 67.7
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.3e-51 205.7 161 66.5
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 1.5e-43 180.3 152 61.8
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 2.8e-42 176.0 104 81.7
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 2.8e-42 176.0 104 81.7
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 2.8e-42 176.0 104 81.7
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 8.0e-42 174.5 143 62.9
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 4.0e-41 172.2 107 76.6
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 4.4e-40 168.7 104 80.8
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 7.5e-40 167.9 107 76.6
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.1e-38 164.1 107 75.7
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.4e-38 162.9 98 81.6
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 3.2e-38 162.5 118 72.9
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 2.0e-37 159.8 95 83.2
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 2.0e-37 159.8 95 83.2
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.0e-37 159.8 95 83.2
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 2.0e-37 159.8 95 83.2
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 3.5e-37 159.1 98 79.6
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.6e-37 158.7 95 81.1
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.6e-37 158.7 102 75.5
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.0e-36 157.5 96 80.2
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 1.7e-36 156.8 101 75.2
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.7e-36 156.8 102 76.5
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 3.0e-36 156.0 95 80.0
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 5.0e-36 155.2 103 73.8
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 8.6e-36 154.5 99 76.8
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 8.6e-36 154.5 97 79.4
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.9e-35 153.3 94 80.9
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.9e-35 153.3 94 80.9
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 3.6e-34 149.1 114 68.4
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 6.2e-34 148.3 88 83.0
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-33 147.1 108 70.4
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 5.2e-33 145.2 104 71.2
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 8.9e-33 144.4 95 77.9
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 1.5e-32 143.7 145 55.9
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 2.0e-32 143.3 92 73.9
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 3.4e-32 142.5 88 77.3
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 4.4e-32 142.1 82 81.7
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.5e-32 141.4 98 71.4
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.1e-30 137.5 99 69.7
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.4e-30 135.2 122 60.7
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 1.2e-29 134.0 185 47.6
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.6e-29 132.1 89 75.3
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 9.5e-27 124.4 74 82.4
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.6e-26 123.6 73 83.6
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 1.6e-26 123.6 73 83.6
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 1.6e-26 123.6 73 83.6
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-26 123.6 112 59.8
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.6e-26 123.6 73 83.6
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 1.6e-26 123.6 73 83.6
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.7e-26 122.1 74 78.4
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.1e-25 120.9 75 80.0
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 1.1e-25 120.9 71 78.9
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 3.1e-25 119.4 73 82.2
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 1.2e-24 117.5 81 75.3
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 2.0e-24 116.7 95 65.3
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 7.6e-24 114.8 65 81.5
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 9.9e-24 114.4 86 60.5
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-23 113.2 86 60.5
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.2e-23 113.2 109 58.7
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.9e-22 110.2 74 74.3
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 3.2e-22 109.4 63 84.1
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 5.4e-22 108.6 64 84.4
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 7.1e-22 108.2 64 84.4
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 9.2e-22 107.8 79 69.6
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 9.2e-22 107.8 79 70.9
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-21 107.1 68 73.5
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 6.0e-21 105.1 79 65.8
Sc25g0002550 Simmondsia chinensis HOM05D000963 ORTHO05D005131 7.8e-21 104.8 66 74.2
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 1.0e-20 104.4 79 68.4
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 1.0e-20 104.4 65 81.5
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.3e-20 104.0 101 59.4
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 3.9e-20 102.4 61 78.7
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.9e-19 100.1 59 78.0
Nitab4.5_0006211g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 6.2e-18 95.1 54 81.5
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 1.1e-17 94.4 66 72.7
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 4.0e-17 92.4 53 79.2
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 5.2e-17 92.0 52 84.6
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 5.2e-17 92.0 63 69.8
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.4e-16 89.4 79 59.5
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.7e-15 87.0 53 75.5
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 2.9e-15 86.3 50 78.0
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 3.8e-15 85.9 56 73.2
EL10As15g24101 Beta vulgaris HOM05D014900 ORTHO05D018510 8.4e-15 84.7 157 41.4
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 9.3e-14 81.3 49 83.7
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 9.3e-14 81.3 69 59.4
Nitab4.5_0008665g0050 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.2e-13 80.9 48 79.2
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 6.0e-13 78.6 46 76.1
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 7.8e-13 78.2 83 53.0
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.3e-12 76.6 67 58.2
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 2.3e-12 76.6 57 66.7
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 6.6e-12 75.1 81 54.3
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 6.6e-12 75.1 41 85.4
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 6.6e-12 75.1 41 85.4
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 6.6e-12 75.1 41 85.4
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 6.6e-12 75.1 41 85.4
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 6.6e-12 75.1 41 85.4
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.5e-11 73.2 46 73.9
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.5e-11 73.2 46 73.9
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.3e-11 72.4 83 49.4
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 5.6e-11 72.0 55 63.6
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 7.3e-11 71.6 51 64.7
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 1.6e-10 70.5 58 60.3
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 3.6e-10 69.3 43 74.4
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 8.1e-10 68.2 98 44.9
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.8e-09 67.0 45 71.1
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.6e-08 63.2 55 58.2
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 3.4e-08 62.8 36 77.8
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 5.8e-08 62.0 49 65.3
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 5.8e-08 62.0 49 65.3
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 5.8e-08 62.0 41 70.7
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 1.3e-07 60.8 48 66.7
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 2.2e-07 60.1 46 69.6
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 2.9e-07 59.7 44 61.4
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 3.8e-07 59.3 49 63.3
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 3.8e-07 59.3 49 63.3
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 3.8e-07 59.3 49 63.3
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 3.8e-07 59.3 49 63.3
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 4.9e-07 58.9 49 63.3
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 4.9e-07 58.9 55 60.0
Oeu014166.1 Olea europaea HOM05D000963 ORTHO05D005131 8.4e-07 58.2 38 68.4
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 1.9e-06 57.0 36 69.4
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.4e-06 55.5 47 57.4
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 9.3e-06 54.7 38 63.2


User provided reference genes

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