Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 8.3e-96 353.6 167 100.0
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 2.4e-87 325.5 170 92.4
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 2.4e-87 325.5 170 92.4
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 2.4e-87 325.5 170 92.4
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 2.4e-87 325.5 170 92.4
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 2.4e-87 325.5 170 92.4
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 5.4e-87 324.3 170 91.8
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 5.4e-87 324.3 170 91.8
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 1.2e-86 323.2 170 91.8
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 3.5e-86 321.6 170 91.2
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.3e-85 319.7 170 91.2
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 5.1e-85 317.8 170 90.6
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 5.1e-85 317.8 170 90.6
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 6.6e-85 317.4 169 91.1
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 8.6e-85 317.0 170 90.0
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 8.6e-85 317.0 170 90.0
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.1e-84 316.6 170 90.6
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.1e-84 316.6 170 90.6
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.1e-84 316.6 170 90.6
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.5e-84 316.2 167 91.0
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 1.5e-84 316.2 170 90.0
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.5e-84 315.5 169 90.5
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 3.3e-84 315.1 170 89.4
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 3.3e-84 315.1 170 90.0
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 5.6e-84 314.3 170 88.8
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 7.3e-84 313.9 170 90.0
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 7.3e-84 313.9 170 90.0
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.2e-83 313.2 170 88.8
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 2.8e-83 312.0 170 88.2
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 2.8e-83 312.0 170 89.4
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 2.8e-83 312.0 170 89.4
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 4.7e-83 311.2 170 89.4
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 4.7e-83 311.2 170 89.4
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 1.4e-82 309.7 170 88.8
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 1.2e-81 306.6 170 88.2
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 1.2e-81 306.6 170 88.2
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 1.2e-81 306.6 170 88.2
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 1.2e-81 306.6 170 88.2
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 1.5e-81 306.2 168 88.7
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 1.5e-81 306.2 168 88.7
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 2.6e-81 305.4 166 89.2
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 9.9e-81 303.5 168 88.1
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 2.2e-80 302.4 170 87.1
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.8e-80 301.6 167 86.8
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-80 301.6 170 85.9
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.1e-79 300.1 167 86.2
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 1.4e-79 299.7 169 87.6
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 7.1e-79 297.4 164 87.2
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 7.1e-79 297.4 164 87.2
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 1.6e-78 296.2 170 85.9
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-78 295.8 163 87.1
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 4.6e-78 294.7 170 84.7
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 1.0e-77 293.5 166 85.5
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 1.3e-77 293.1 170 84.7
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 1.3e-77 293.1 167 83.8
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 5.1e-77 291.2 167 85.0
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 5.6e-76 287.7 168 83.9
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 2.4e-74 282.3 158 86.7
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-74 282.0 164 82.9
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 3.4e-73 278.5 170 79.4
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 4.4e-73 278.1 167 80.8
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-71 272.7 162 82.7
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-70 269.2 156 84.0
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 2.7e-70 268.9 158 81.6
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 6.0e-70 267.7 167 77.2
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 1.3e-69 266.5 144 89.6
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 3.0e-69 265.4 153 85.6
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 5.6e-68 261.2 141 90.1
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 5.6e-68 261.2 141 90.1
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 2.8e-67 258.8 167 78.4
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 3.6e-67 258.5 144 88.2
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 4.5e-65 251.5 135 89.6
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 7.6e-65 250.8 138 88.4
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 4.9e-64 248.1 156 78.8
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-63 246.9 143 83.2
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 1.9e-63 246.1 170 75.3
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-62 240.7 146 80.8
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-62 240.7 146 80.8
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-61 239.6 154 76.0
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 3.9e-61 238.4 140 82.1
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 6.7e-61 237.7 148 79.1
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-60 236.9 144 81.2
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-60 236.1 143 81.1
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-60 235.7 164 69.5
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 4.3e-60 235.0 172 73.3
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 4.0e-58 228.4 131 84.0
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 1.7e-56 223.0 136 81.6
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.9e-55 219.5 124 86.3
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 7.4e-52 207.6 138 77.5
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 8.2e-51 204.1 127 79.5
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 5.3e-50 201.4 114 85.1
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-49 199.1 133 76.7
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 4.5e-49 198.4 129 76.7
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-49 198.0 133 75.9
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 1.4e-47 193.4 129 76.0
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 1.4e-47 193.4 114 83.3
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 7.1e-47 191.0 94 92.6
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 6.0e-46 188.0 100 89.0
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 6.0e-46 188.0 101 89.1
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 1.9e-44 183.0 92 90.2
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 1.9e-44 183.0 102 83.3
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 4.3e-44 181.8 96 89.6
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 5.7e-44 181.4 153 57.5
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 2.2e-43 179.5 136 66.9
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.8e-42 176.4 146 56.2
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.4e-42 176.0 101 84.2
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 6.9e-42 174.5 115 77.4
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 4.5e-41 171.8 115 77.4
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-40 170.6 100 82.0
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.1e-39 167.2 124 69.4
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.1e-39 167.2 94 83.0
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 1.0e-37 160.6 79 91.1
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-37 159.8 89 82.0
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 5.1e-37 158.3 142 58.5
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.1e-36 157.1 127 66.1
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 2.5e-36 156.0 84 92.9
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 1.3e-35 153.7 161 55.3
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-35 152.5 87 80.5
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-35 152.5 87 80.5
Gohir.A03G134200 Gossypium hirsutum HOM05D001560 ORTHO05D004675 1.8e-34 149.8 74 93.2
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-34 148.7 167 49.7
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 6.9e-34 147.9 129 63.6
CAN.G134.23 Capsicum annuum HOM05D001560 ORTHO05D004675 2.6e-33 146.0 74 90.5
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 4.5e-33 145.2 89 80.9
Zm00001eb436070 Zea mays HOM05D001560 ORTHO05D004675 1.7e-32 143.3 74 89.2
Zm00001eb440310 Zea mays HOM05D001560 ORTHO05D004675 1.7e-32 143.3 74 89.2
Zm00001eb440380 Zea mays HOM05D001560 ORTHO05D004675 1.7e-32 143.3 74 89.2
Zm00001eb442180 Zea mays HOM05D001560 ORTHO05D004675 1.7e-32 143.3 74 89.2
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-32 142.5 81 80.2
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 1.4e-31 140.2 74 85.1
SHI36081 Sapria himalayana HOM05D001560 ORTHO05D004675 3.2e-31 139.0 74 86.5
SHI36375 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-31 138.7 74 86.5
AUR62042344 Chenopodium quinoa HOM05D001560 ORTHO05D004675 7.2e-31 137.9 71 87.3
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.1e-30 136.3 91 75.8
SHI40902 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-30 136.3 74 85.1
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.7e-30 136.0 141 54.6
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-30 134.4 75 85.3
Nitab4.5_0013170g0020 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.4e-29 133.7 72 84.7
SHI38033 Sapria himalayana HOM05D001560 ORTHO05D004675 1.4e-29 133.7 74 83.8
SHI39123 Sapria himalayana HOM05D001560 ORTHO05D004675 2.3e-29 132.9 74 82.4
SHI36627 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-28 130.6 70 85.7
SHI36939 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-28 130.6 72 83.3
SHI43451 Sapria himalayana HOM05D001560 ORTHO05D004675 3.3e-28 129.0 74 81.1
SHI34635 Sapria himalayana HOM05D001560 ORTHO05D004675 9.7e-28 127.5 72 80.6
Nitab4.5_0001127g0220 Nicotiana tabacum HOM05D001560 ORTHO05D004675 2.2e-27 126.3 74 78.4
SHI34631 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-27 125.9 74 81.1
SHI38213 Sapria himalayana HOM05D001560 ORTHO05D004675 6.3e-27 124.8 74 79.7
SMO053G0006 Selaginella moellendorffii HOM05D001560 ORTHO05D004675 1.1e-26 124.0 153 43.8
SHI27346 Sapria himalayana HOM05D001560 ORTHO05D004675 3.1e-26 122.5 71 80.3
SHI38099 Sapria himalayana HOM05D001560 ORTHO05D004675 2.0e-25 119.8 74 77.0
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.4e-25 119.0 119 54.6
SHI49835 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-24 115.9 132 53.0
SHI50380 Sapria himalayana HOM05D001560 ORTHO05D004675 2.9e-24 115.9 132 53.0
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 2.9e-24 115.9 64 85.9
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 3.8e-24 115.5 69 79.7
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 9.4e-23 110.9 92 63.0
Nitab4.5_0000661g0100 Nicotiana tabacum HOM05D001560 ORTHO05D004675 1.4e-21 107.1 64 78.1
SHI33106 Sapria himalayana HOM05D000743 ORTHO05D000580 5.7e-20 101.7 59 86.4
CsaV3_5G015880 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.1e-18 95.9 49 87.8
SHI36269 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-18 95.5 116 47.4
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 9.1e-18 94.4 47 89.4
Prupe.2G039100 Prunus persica HOM05D001560 ORTHO05D004675 1.7e-16 90.1 59 79.7
SHI44216 Sapria himalayana HOM05D001560 ORTHO05D004675 6.5e-16 88.2 69 65.2
SHI35323 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-15 86.7 58 72.4
Nitab4.5_0019346g0010 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.2e-15 85.5 44 88.6
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 2.2e-11 73.2 36 94.4
Nitab4.5_0001152g0580 Nicotiana tabacum HOM05D001560 ORTHO05D004675 4.1e-10 68.9 45 68.9
SHI33107 Sapria himalayana HOM05D001560 ORTHO05D004675 4.1e-10 68.9 50 66.0
EL10Ac7g17432 Beta vulgaris HOM05D001560 ORTHO05D004675 1.6e-09 67.0 35 85.7
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 1.7e-08 63.5 29 96.6
SHI36570 Sapria himalayana HOM05D001560 ORTHO05D004675 3.8e-08 62.4 60 53.3
SHI35288 Sapria himalayana HOM05D001560 ORTHO05D004675 5.0e-08 62.0 69 46.4
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 5.5e-07 58.5 30 83.3
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 4.7e-06 55.5 46 58.7


User provided reference genes

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