Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-244 849.4 443 100.0
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 3.2e-211 738.4 446 87.2
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 7.3e-208 727.2 447 85.2
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 9.6e-208 726.9 448 85.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.6e-207 726.1 446 86.1
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.1e-207 725.7 446 85.4
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.8e-207 724.5 448 85.5
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.1e-206 721.8 446 84.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 5.3e-206 721.1 445 85.4
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 6.9e-206 720.7 448 84.8
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.5e-205 719.5 445 85.4
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 2.0e-205 719.2 447 85.2
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.0e-205 719.2 445 84.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.5e-205 718.0 446 85.2
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 7.6e-205 717.2 444 84.2
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 9.9e-205 716.8 445 84.9
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 9.9e-205 716.8 445 84.7
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.8e-204 714.9 445 85.2
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 8.4e-204 713.8 443 84.9
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 8.4e-204 713.8 446 84.3
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.4e-203 713.0 443 84.0
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.4e-203 713.0 444 84.7
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.4e-203 713.0 449 85.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.2e-203 711.8 444 83.8
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 4.2e-203 711.4 447 84.1
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 5.4e-203 711.1 446 83.4
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 5.4e-203 711.1 447 83.2
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.2e-202 709.9 447 84.8
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.7e-202 708.8 447 83.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 6.0e-202 707.6 443 83.7
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 6.0e-202 707.6 444 84.0
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.9e-202 707.2 441 83.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 1.0e-201 706.8 446 82.7
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 1.0e-201 706.8 446 82.7
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.0e-201 706.8 449 82.2
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 6.7e-201 704.1 446 83.4
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.1e-200 703.4 445 82.9
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.9e-200 702.6 445 83.8
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.3e-200 701.8 445 83.4
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.3e-200 701.8 445 82.2
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.3e-200 701.4 445 83.4
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 7.4e-200 700.7 445 83.1
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 9.6e-200 700.3 445 82.7
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 9.6e-200 700.3 446 83.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 2.8e-199 698.7 445 81.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 8.1e-199 697.2 442 82.8
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.1e-198 696.8 442 83.0
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.4e-198 696.4 445 83.6
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.4e-198 696.4 446 81.8
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 3.1e-198 695.3 442 82.6
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 5.3e-198 694.5 443 82.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 6.9e-198 694.1 446 83.2
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.0e-197 692.6 447 82.1
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.0e-197 692.6 449 81.1
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.6e-197 692.2 447 83.2
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 7.6e-197 690.6 446 82.1
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 7.6e-197 690.6 445 82.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 9.9e-197 690.3 445 82.7
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 9.9e-197 690.3 445 82.7
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.3e-196 689.9 442 82.6
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.7e-196 689.5 446 81.4
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.7e-196 689.5 443 81.9
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 3.8e-196 688.3 445 81.8
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.9e-196 688.0 446 80.7
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 6.4e-196 687.6 447 81.7
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.4e-195 686.4 443 82.2
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.9e-195 686.0 446 81.6
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 2.5e-195 685.6 443 82.2
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.2e-195 685.3 443 81.9
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 4.2e-195 684.9 443 81.9
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.6e-194 682.9 445 80.9
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.6e-194 682.9 447 80.8
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.1e-194 682.6 443 81.5
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 2.7e-194 682.2 444 80.4
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 6.0e-194 681.0 448 80.8
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.3e-193 679.9 442 79.9
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 6.7e-193 677.6 443 79.5
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 6.7e-193 677.6 443 81.3
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 6.7e-193 677.6 443 81.3
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 8.7e-193 677.2 445 80.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.1e-192 676.8 443 79.0
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.5e-192 676.4 443 80.1
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.5e-192 676.4 445 80.9
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.5e-192 675.6 443 81.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.5e-192 675.6 442 80.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 5.6e-192 674.5 444 80.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 1.6e-191 672.9 399 86.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.6e-191 672.9 441 79.8
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 4.8e-191 671.4 443 79.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.4e-190 669.8 417 83.7
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.4e-190 669.8 444 78.8
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.4e-190 669.1 399 85.2
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 5.3e-190 667.9 399 85.0
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 6.9e-190 667.5 413 83.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 6.9e-190 667.5 413 83.8
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.5e-189 666.4 450 78.9
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 2.0e-189 666.0 441 78.9
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 3.4e-189 665.2 446 79.6
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 2.9e-188 662.1 444 79.1
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 4.9e-188 661.4 444 79.1
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.9e-187 659.4 445 78.4
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 3.2e-187 658.7 444 78.8
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 3.2e-187 658.7 444 78.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 7.1e-187 657.5 447 78.1
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.1e-182 643.7 447 77.4
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.1e-182 643.7 398 82.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.1e-182 643.7 464 73.9
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.4e-182 643.3 438 77.4
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 9.0e-182 640.6 491 70.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.3e-180 636.7 391 84.1
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.7e-180 636.3 413 78.7
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.9e-180 635.6 443 75.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 5.0e-180 634.8 441 75.3
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-179 633.6 487 71.7
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 9.4e-179 630.6 386 82.4
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 2.1e-178 629.4 441 75.5
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.7e-178 629.0 438 75.6
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.6e-178 628.6 442 77.1
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.5e-173 613.2 444 75.2
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.4e-171 606.7 384 82.8
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 3.3e-168 595.5 447 73.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.8e-164 582.0 373 83.4
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.2e-162 577.0 392 79.3
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.4e-153 547.0 363 79.1
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.0e-153 545.8 372 72.3
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 6.8e-153 544.7 406 68.0
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 6.8e-153 544.7 307 90.9
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 2.2e-151 539.7 371 69.8
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.1e-146 523.1 363 69.7
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.6e-144 516.2 370 69.5
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-143 513.8 402 65.9
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-143 513.5 374 68.7
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-143 513.1 374 68.7
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.0e-141 506.5 389 66.6
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.5e-141 505.8 391 64.7
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.5e-141 505.8 366 67.2
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.0e-140 504.2 378 64.8
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.5e-139 499.6 361 70.9
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.0e-137 492.3 424 60.4
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.2e-134 482.6 358 64.0
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.0e-132 477.6 317 78.5
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.3e-131 471.5 371 62.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.0e-129 465.7 360 63.9
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.4e-118 428.7 365 61.9
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 8.7e-100 368.2 368 55.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.2e-94 349.4 302 61.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 6.7e-84 315.5 214 75.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.8e-73 280.8 204 76.0
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 7.4e-67 258.8 328 44.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 5.5e-62 242.7 157 81.5
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 3.0e-60 236.9 123 90.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.8e-58 230.3 199 60.3
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 7.7e-56 222.2 154 72.1
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 5.5e-38 162.9 119 68.9
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.2e-37 161.8 162 51.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.0e-36 158.7 134 64.9
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 8.3e-34 149.1 81 91.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.9e-30 137.9 82 86.6
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 8.0e-29 132.5 113 57.5
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.4e-27 126.7 80 72.5
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 4.4e-19 100.1 144 43.1
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.1e-17 95.5 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.0e-15 87.4 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.0e-07 62.4 133 39.8


User provided reference genes

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