Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 1.7e-20 101.7 50 100.0
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 5.0e-12 73.6 40 90.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 6.5e-12 73.2 46 78.3
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 8.5e-12 72.8 46 76.1
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.2e-11 70.9 47 74.5
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 7.2e-11 69.7 46 71.7
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.2e-10 68.9 47 74.5
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 4.7e-10 67.0 42 81.0
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.7e-10 67.0 42 81.0
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.7e-10 67.0 42 81.0
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 4.7e-10 67.0 42 81.0
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 6.1e-10 66.6 43 76.7
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.3e-09 64.7 43 69.8
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 2.3e-09 64.7 48 68.8
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 2.3e-09 64.7 43 76.7
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 3.9e-09 63.9 48 66.7
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 3.9e-09 63.9 44 70.5
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 5.1e-09 63.5 50 64.0
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 6.7e-09 63.2 42 76.2
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 8.8e-09 62.8 40 77.5
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 8.8e-09 62.8 49 63.3
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-08 62.4 40 75.0
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-08 62.4 40 75.0
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-08 62.4 40 75.0
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 1.1e-08 62.4 39 76.9
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.1e-08 62.4 44 72.7
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.5e-08 62.0 42 66.7
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.5e-08 62.0 42 73.8
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 2.0e-08 61.6 42 73.8
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.0e-08 61.6 49 61.2
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.6e-08 61.2 41 68.3
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 3.3e-08 60.8 40 72.5
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 3.3e-08 60.8 40 72.5
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 3.3e-08 60.8 40 72.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 3.3e-08 60.8 40 72.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 3.3e-08 60.8 42 71.4
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 4.4e-08 60.5 40 67.5
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 4.4e-08 60.5 40 67.5
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 4.4e-08 60.5 40 67.5
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 5.7e-08 60.1 39 71.8
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 5.7e-08 60.1 40 67.5
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 5.7e-08 60.1 49 61.2
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 5.7e-08 60.1 47 66.0
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 7.4e-08 59.7 40 70.0
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 7.4e-08 59.7 40 70.0
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 7.4e-08 59.7 40 70.0
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 9.7e-08 59.3 42 64.3
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 9.7e-08 59.3 49 59.2
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.3e-07 58.9 39 71.8
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.3e-07 58.9 42 71.4
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.3e-07 58.9 42 69.0
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.3e-07 58.9 42 71.4
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.7e-07 58.5 46 63.0
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 1.7e-07 58.5 44 65.9
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.2e-07 58.2 46 63.0
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 2.2e-07 58.2 46 60.9
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 2.2e-07 58.2 42 66.7
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 3.7e-07 57.4 42 69.0
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.7e-07 57.4 46 60.9
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.7e-07 57.4 45 64.4
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.7e-07 57.4 45 64.4
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 3.7e-07 57.4 43 65.1
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 4.8e-07 57.0 45 64.4
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 4.8e-07 57.0 42 66.7
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 4.8e-07 57.0 42 69.0
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.8e-07 57.0 42 69.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.8e-07 57.0 42 69.0
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 6.3e-07 56.6 42 69.0
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 6.3e-07 56.6 42 61.9
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 6.3e-07 56.6 42 66.7
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 8.2e-07 56.2 42 69.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 8.2e-07 56.2 45 64.4
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.1e-06 55.8 42 66.7
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.1e-06 55.8 47 55.3
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 1.4e-06 55.5 45 64.4
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.8e-06 55.1 42 64.3
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.8e-06 55.1 42 61.9
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.8e-06 55.1 42 64.3
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.8e-06 55.1 42 64.3
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.4e-06 54.7 42 69.0
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.4e-06 54.7 44 59.1
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.4e-06 54.7 45 62.2
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 3.1e-06 54.3 42 66.7
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.1e-06 54.3 44 61.4
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.1e-06 54.3 44 61.4
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.1e-06 53.9 49 59.2
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 4.1e-06 53.9 43 55.8
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 5.3e-06 53.5 39 69.2
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 7.0e-06 53.1 42 64.3
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.0e-06 53.1 42 64.3
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.0e-06 53.1 42 64.3
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.0e-06 53.1 42 64.3
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 7.0e-06 53.1 40 65.0
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 9.1e-06 52.8 37 67.6


User provided reference genes

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