Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc38.33 Carica papaya HOM05D001917 ORTHO05D002790 6.2e-31 137.1 85 100.0
arahy.Tifrunner.gnm1.ann1.ICMC1Y Arachis hypogaea HOM05D001917 ORTHO05D002790 3.7e-15 84.7 70 67.1
arahy.Tifrunner.gnm1.ann1.900H0A Arachis hypogaea HOM05D001917 ORTHO05D002790 6.3e-15 84.0 71 66.2
arahy.Tifrunner.gnm1.ann1.AY0SR4 Arachis hypogaea HOM05D001917 ORTHO05D002790 1.4e-14 82.8 71 66.2
arahy.Tifrunner.gnm1.ann1.BCF1Q0 Arachis hypogaea HOM05D001917 ORTHO05D002790 1.8e-14 82.4 70 72.9
Lj4g0019684 Lotus japonicus HOM05D001917 ORTHO05D002790 2.4e-14 82.0 69 66.7
Lalb_Chr07g0185821 Lupinus albus HOM05D001917 ORTHO05D002790 4.1e-14 81.3 69 65.2
Lalb_Chr12g0204531 Lupinus albus HOM05D001917 ORTHO05D002790 1.2e-13 79.7 69 63.8
Medtr8g088650 Medicago truncatula HOM05D001917 ORTHO05D002790 1.5e-13 79.3 70 62.9
TPR.G6809 Trifolium pratense HOM05D001917 ORTHO05D002790 1.5e-13 79.3 69 63.8
Nn3g18937 Nelumbo nucifera HOM05D001917 ORTHO05D002790 2.0e-13 79.0 70 62.9
Ca_17835_v3 Cicer arietinum L. HOM05D001917 ORTHO05D002790 2.6e-13 78.6 68 63.2
Manes.07G020400 Manihot esculenta HOM05D001917 ORTHO05D002790 2.6e-13 78.6 69 73.9
Manes.07G020850 Manihot esculenta HOM05D001917 ORTHO05D002790 2.6e-13 78.6 69 73.9
Potri.004G219100 Populus trichocarpa HOM05D001917 ORTHO05D002790 2.6e-13 78.6 71 69.0
TWI14G0546 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 2.6e-13 78.6 69 65.2
EL10Ac9g22036 Beta vulgaris HOM05D001917 ORTHO05D002790 4.5e-13 77.8 70 74.3
QL02p099840 Quercus lobata HOM05D001917 ORTHO05D002790 5.9e-13 77.4 75 65.3
TWI59G0573 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 5.9e-13 77.4 67 65.7
CiPaw.05G050800 Carya illinoinensis HOM05D001917 ORTHO05D002790 1.0e-12 76.6 71 73.2
Cfa005489 Carpinus fangiana HOM05D001917 ORTHO05D002790 1.7e-12 75.9 71 70.4
DCAR_006686 Daucus carota HOM05D001917 ORTHO05D002790 1.7e-12 75.9 76 60.5
CiPaw.06G144000 Carya illinoinensis HOM05D001917 ORTHO05D002790 3.8e-12 74.7 71 73.2
Gohir.D04G163200 Gossypium hirsutum HOM05D001917 ORTHO05D002790 6.5e-12 73.9 71 59.2
MD08G1238800 Malus domestica HOM05D001917 ORTHO05D002790 8.5e-12 73.6 71 77.5
Glyma.08G126500 Glycine max HOM05D001917 ORTHO05D002790 1.1e-11 73.2 62 71.0
Gorai.012G151300 Gossypium raimondii HOM05D001917 ORTHO05D002790 1.1e-11 73.2 71 59.2
Dinv19392 Davidia involucrata HOM05D001917 ORTHO05D002790 2.5e-11 72.0 71 64.8
VMungo0251G2048 Vigna mungo HOM05D001917 ORTHO05D002790 3.2e-11 71.6 62 75.8
Potri.003G014800 Populus trichocarpa HOM05D001917 ORTHO05D002790 5.5e-11 70.9 71 66.2
Haze_01816 Corylus avellana HOM05D001917 ORTHO05D002790 7.2e-11 70.5 68 63.2
Gohir.A04G121926 Gossypium hirsutum HOM05D001917 ORTHO05D002790 7.2e-11 70.5 71 57.7
PSO782G0466 Papaver somniferum HOM05D001917 ORTHO05D002790 7.2e-11 70.5 71 57.7
CsaV3_3G019270 Cucumis sativus L. HOM05D001917 ORTHO05D002790 9.4e-11 70.1 68 69.1
Lalb_Chr13g0295621 Lupinus albus HOM05D001917 ORTHO05D002790 9.4e-11 70.1 77 55.8
PSO170G4920 Papaver somniferum HOM05D001917 ORTHO05D002790 9.4e-11 70.1 71 57.7
Ah.01g021660 Amaranthus hybridus HOM05D001917 ORTHO05D002790 1.2e-10 69.7 70 65.7
TAR381G1439 Trochodendron aralioides HOM05D001917 ORTHO05D002790 1.2e-10 69.7 71 60.6
Lj5A255T86 Lonicera japonica HOM05D001917 ORTHO05D002790 1.6e-10 69.3 71 74.6
CANSAT11G0170 Cannabis sativa HOM05D001917 ORTHO05D002790 2.7e-10 68.6 68 70.6
Glyma.05G168100 Glycine max HOM05D001917 ORTHO05D002790 2.7e-10 68.6 61 73.8
Manes.10G123800 Manihot esculenta HOM05D001917 ORTHO05D002790 2.7e-10 68.6 69 69.6
Sc07g0005000 Simmondsia chinensis HOM05D001917 ORTHO05D002790 2.7e-10 68.6 69 69.6
MELO3C019429.2 Cucumis melo HOM05D001917 ORTHO05D002790 3.6e-10 68.2 68 67.6
Os12g0194600 Oryza sativa ssp. japonica HOM05D001917 ORTHO05D002790 3.6e-10 68.2 71 57.7
Zm00001eb138730 Zea mays HOM05D001917 ORTHO05D002790 3.6e-10 68.2 71 60.6
FvH4_5g28730 Fragaria vesca HOM05D001917 ORTHO05D002790 4.6e-10 67.8 71 71.8
FAN13G3267 Fragaria x ananassa HOM05D001917 ORTHO05D002790 4.6e-10 67.8 71 71.8
FAN18G1669 Fragaria x ananassa HOM05D001917 ORTHO05D002790 4.6e-10 67.8 71 71.8
Gohir.A03G192700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 4.6e-10 67.8 71 69.0
Gohir.D02G213700 Gossypium hirsutum HOM05D001917 ORTHO05D002790 4.6e-10 67.8 71 69.0
Prupe.1G575800 Prunus persica HOM05D001917 ORTHO05D002790 4.6e-10 67.8 80 67.5
RcHm_v2.0_Chr7g0220891 Rosa chinensis HOM05D001917 ORTHO05D002790 4.6e-10 67.8 71 71.8
PGR142G3237 Punica granatum HOM05D001917 ORTHO05D002790 6.1e-10 67.4 71 62.0
Atru.chr6.697 Acer truncatum HOM05D001917 ORTHO05D002790 7.9e-10 67.0 71 71.8
MSTRG.5118 Avicennia marina HOM05D001917 ORTHO05D002790 7.9e-10 67.0 71 56.3
Oeu023417.1 Olea europaea HOM05D001917 ORTHO05D002790 1.0e-09 66.6 69 62.3
Phvul.002G248500 Phaseolus vulgaris HOM05D001917 ORTHO05D002790 1.4e-09 66.2 62 77.4
Thecc.02G090500 Theobroma cacao HOM05D001917 ORTHO05D002790 1.8e-09 65.9 71 74.6
BcaC04g22117 Brassica carinata HOM05D001917 ORTHO05D002790 2.3e-09 65.5 65 55.4
A09p18550 Brassica napus HOM05D001917 ORTHO05D002790 2.3e-09 65.5 65 55.4
C09p23160 Brassica napus HOM05D001917 ORTHO05D002790 2.3e-09 65.5 65 55.4
BolC9t55235H Brassica oleracea HOM05D001917 ORTHO05D002790 2.3e-09 65.5 65 55.4
DCAR_012539 Daucus carota HOM05D001917 ORTHO05D002790 2.3e-09 65.5 71 64.8
Zm00001eb169130 Zea mays HOM05D001917 ORTHO05D002790 2.3e-09 65.5 69 53.6
Gorai.005G241600 Gossypium raimondii HOM05D001917 ORTHO05D002790 3.0e-09 65.1 71 67.6
MBI03_g13496_MAGBIO Magnolia biondii HOM05D001917 ORTHO05D002790 3.0e-09 65.1 70 58.6
Thhalv10023533m.g Eutrema salsugineum HOM05D001917 ORTHO05D002790 6.7e-09 63.9 65 56.9
Hma1.2p1_1108F.1_g257810 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 8.8e-09 63.5 71 71.8
Sabra03G0007900 Salix brachista HOM05D001917 ORTHO05D002790 8.8e-09 63.5 71 60.6
MD15G1430600 Malus domestica HOM05D001917 ORTHO05D002790 1.1e-08 63.2 71 67.6
Sp2g05470 Schrenkiella parvula HOM05D001917 ORTHO05D002790 1.1e-08 63.2 65 55.4
Aqoxy2G03360 Aquilegia oxysepala HOM05D001917 ORTHO05D002790 1.5e-08 62.8 71 53.5
BraA09t37481Z Brassica rapa HOM05D001917 ORTHO05D002790 1.5e-08 62.8 65 58.5
Eucgr.I02749 Eucalyptus grandis HOM05D001917 ORTHO05D002790 1.5e-08 62.8 71 69.0
vmacro19874 Vaccinium macrocarpon HOM05D001917 ORTHO05D002790 1.5e-08 62.8 68 60.3
PGSC0003DMG401024930 Solanum tuberosum HOM05D001917 ORTHO05D002790 1.9e-08 62.4 71 54.9
GSVIVG01023292001 Vitis vinifera HOM05D001917 ORTHO05D002790 2.5e-08 62.0 71 67.6
Gohir.A13G036500 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.3e-08 61.6 71 69.0
Gohir.D04G163400 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.3e-08 61.6 71 53.5
Sed0013466 Sechium edule HOM05D001917 ORTHO05D002790 3.3e-08 61.6 71 60.6
Carub.0002s0651 Capsella rubella HOM05D001917 ORTHO05D002790 5.7e-08 60.8 65 55.4
Nitab4.5_0002698g0070 Nicotiana tabacum HOM05D001917 ORTHO05D002790 5.7e-08 60.8 71 54.9
Sed0027953 Sechium edule HOM05D001917 ORTHO05D002790 5.7e-08 60.8 66 69.7
AL2G18070 Arabidopsis lyrata HOM05D001917 ORTHO05D002790 7.4e-08 60.5 65 53.8
A01p28180 Brassica napus HOM05D001917 ORTHO05D002790 7.4e-08 60.5 65 53.8
BraA01t02948Z Brassica rapa HOM05D001917 ORTHO05D002790 7.4e-08 60.5 65 53.8
Duzib248G0928 Durio zibethinus HOM05D001917 ORTHO05D002790 7.4e-08 60.5 71 59.2
TWI23G0075 Tripterygium wilfordii HOM05D001917 ORTHO05D002790 9.7e-08 60.1 68 67.6
Nitab4.5_0029272g0010 Nicotiana tabacum HOM05D001917 ORTHO05D002790 1.3e-07 59.7 71 53.5
SalBow3G3660 Salvia bowleyana HOM05D001917 ORTHO05D002790 1.7e-07 59.3 71 63.4
BcaB04g20186 Brassica carinata HOM05D001917 ORTHO05D002790 2.2e-07 58.9 65 64.6
Ciclev10001528m.g Citrus clementina HOM05D001917 ORTHO05D002790 2.2e-07 58.9 68 64.7
Hund12943 Selenicereus undatus HOM05D001917 ORTHO05D002790 2.2e-07 58.9 63 74.6
Aa31LG2G10980 Aethionema arabicum HOM05D001917 ORTHO05D002790 2.8e-07 58.5 65 61.5
BcaC09g49511 Brassica carinata HOM05D001917 ORTHO05D002790 2.8e-07 58.5 65 52.3
C01p35740 Brassica napus HOM05D001917 ORTHO05D002790 2.8e-07 58.5 65 52.3
BolC1t03533H Brassica oleracea HOM05D001917 ORTHO05D002790 2.8e-07 58.5 65 52.3
Actinidia39018 Actinidia chinensis HOM05D001917 ORTHO05D002790 3.7e-07 58.2 68 50.0
Gohir.D13G034800 Gossypium hirsutum HOM05D001917 ORTHO05D002790 4.8e-07 57.8 71 64.8
Gorai.013G039300 Gossypium raimondii HOM05D001917 ORTHO05D002790 4.8e-07 57.8 71 64.8
CARHR053940 Cardamine hirsuta HOM05D001917 ORTHO05D002790 6.3e-07 57.4 65 53.8
ClCG11G013420 Citrullus lanatus HOM05D001917 ORTHO05D002790 6.3e-07 57.4 68 58.8
Thhalv10023536m.g Eutrema salsugineum HOM05D001917 ORTHO05D002790 6.3e-07 57.4 65 52.3
MELO3C011839.2 Cucumis melo HOM05D001917 ORTHO05D002790 8.2e-07 57.0 70 54.3
Migut.N00836 Erythranthe guttata HOM05D001917 ORTHO05D002790 8.2e-07 57.0 68 48.5
Sed0027900 Sechium edule HOM05D001917 ORTHO05D002790 8.2e-07 57.0 67 61.2
Hma1.2p1_1928F.1_g307820 Hydrangea macrophylla HOM05D001917 ORTHO05D002790 1.1e-06 56.6 66 62.1
MSTRG.16506 Avicennia marina HOM05D001917 ORTHO05D002790 1.4e-06 56.2 70 51.4
DCAR_001831 Daucus carota HOM05D001917 ORTHO05D002790 1.8e-06 55.8 65 61.5
DCAR_029264 Daucus carota HOM05D001917 ORTHO05D002790 1.8e-06 55.8 63 63.5
AT1G58110 Arabidopsis thaliana HOM05D001917 ORTHO05D002790 3.1e-06 55.1 61 52.5
AUR62016492 Chenopodium quinoa HOM05D001917 ORTHO05D002790 3.1e-06 55.1 37 70.3
Gohir.D12G026800 Gossypium hirsutum HOM05D001917 ORTHO05D002790 3.1e-06 55.1 57 73.7
SGA_v2.0_scaffold92G28306 Striga asiatica HOM05D001917 ORTHO05D002790 3.1e-06 55.1 66 50.0
ClCG05G009440 Citrullus lanatus HOM05D001917 ORTHO05D002790 4.1e-06 54.7 62 67.7
Oeu049833.1 Olea europaea HOM05D001917 ORTHO05D002790 4.1e-06 54.7 66 53.0
Oeu049834.1 Olea europaea HOM05D001917 ORTHO05D002790 4.1e-06 54.7 66 53.0
Nitab4.5_0000948g0280 Nicotiana tabacum HOM05D001917 ORTHO05D002790 5.3e-06 54.3 71 60.6
Sopen01g046280 Solanum pennellii HOM05D001917 ORTHO05D002790 5.3e-06 54.3 71 66.2
PSO017G7022 Papaver somniferum HOM05D001917 ORTHO05D002790 6.9e-06 53.9 74 59.5
PSO170G1283 Papaver somniferum HOM05D001917 ORTHO05D002790 6.9e-06 53.9 74 59.5


User provided reference genes

Program Settings