Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 5.1e-48 194.1 101 100.0
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 5.9e-20 100.9 77 70.1
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 7.7e-20 100.5 77 67.5
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 1.0e-19 100.1 83 65.1
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.5e-18 95.5 75 66.7
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 1.6e-17 92.8 74 63.5
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.6e-17 92.8 76 61.8
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.6e-17 91.7 78 61.5
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 4.7e-17 91.3 72 69.4
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 7.9e-17 90.5 121 46.3
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 7.9e-17 90.5 73 67.1
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.0e-16 90.1 81 61.7
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.4e-16 89.7 89 57.3
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 2.3e-16 89.0 83 61.4
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 3.9e-16 88.2 78 59.0
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 3.9e-16 88.2 78 57.7
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 6.7e-16 87.4 79 55.7
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 1.1e-15 86.7 82 52.4
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 1.1e-15 86.7 98 49.0
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 2.0e-15 85.9 71 59.2
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 2.0e-15 85.9 80 57.5
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 3.3e-15 85.1 97 50.5
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 3.3e-15 85.1 72 62.5
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 3.3e-15 85.1 103 45.6
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 4.4e-15 84.7 74 58.1
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 5.7e-15 84.3 78 53.8
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 5.7e-15 84.3 91 53.8
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 7.4e-15 84.0 66 62.1
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 7.4e-15 84.0 79 54.4
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 9.7e-15 83.6 78 55.1
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 1.3e-14 83.2 79 55.7
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.7e-14 82.8 96 49.0
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.7e-14 82.8 78 53.8
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 1.7e-14 82.8 75 57.3
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 1.7e-14 82.8 75 53.3
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.7e-14 82.8 78 51.3
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 2.2e-14 82.4 79 58.2
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 2.8e-14 82.0 76 55.3
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 4.8e-14 81.3 91 52.7
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.8e-14 81.3 78 50.0
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 8.2e-14 80.5 78 52.6
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.1e-13 80.1 76 53.9
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-13 80.1 83 57.8
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.1e-13 80.1 75 57.3
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.1e-13 80.1 75 57.3
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.1e-13 80.1 84 48.8
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.4e-13 79.7 90 50.0
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.8e-13 79.3 84 47.6
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 1.8e-13 79.3 84 47.6
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.4e-13 79.0 60 65.0
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.1e-13 78.6 76 52.6
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.1e-13 78.6 78 50.0
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 5.3e-13 77.8 85 54.1
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 7.0e-13 77.4 85 54.1
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 9.1e-13 77.0 78 50.0
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 9.1e-13 77.0 78 50.0
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.2e-12 76.6 81 58.0
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.2e-12 76.6 74 58.1
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 1.6e-12 76.3 96 47.9
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.6e-12 76.3 76 52.6
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 2.0e-12 75.9 77 50.6
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.6e-12 75.5 78 55.1
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.5e-12 75.1 64 60.9
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 4.5e-12 74.7 79 49.4
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 5.9e-12 74.3 70 58.6
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 7.7e-12 73.9 76 52.6
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.0e-11 73.6 68 57.4
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.3e-11 73.2 76 50.0
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.3e-11 73.2 76 50.0
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 1.3e-11 73.2 98 42.9
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.3e-11 73.2 74 51.4
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.7e-11 72.8 76 50.0
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.9e-11 72.0 83 53.0
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 2.9e-11 72.0 74 51.4
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 3.8e-11 71.6 76 47.4
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 5.0e-11 71.2 74 50.0
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 5.0e-11 71.2 81 45.7
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 6.5e-11 70.9 79 46.8
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.5e-11 70.5 55 63.6
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.5e-11 70.5 75 53.3
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 8.5e-11 70.5 55 63.6
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 1.1e-10 70.1 63 50.8
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.1e-10 70.1 72 51.4
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.5e-10 69.7 82 48.8
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.5e-10 69.7 104 40.4
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.9e-10 69.3 78 47.4
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.9e-10 69.3 69 52.2
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 2.5e-10 68.9 79 45.6
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.2e-10 68.6 79 50.6
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 3.2e-10 68.6 105 42.9
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.2e-10 68.2 77 46.8
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 5.5e-10 67.8 88 42.0
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 7.2e-10 67.4 74 45.9
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 9.4e-10 67.0 69 52.2
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 9.4e-10 67.0 69 52.2
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.6e-09 66.2 75 49.3
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.6e-09 66.2 80 46.2
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.7e-09 64.7 79 45.6
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 1.4e-08 63.2 84 42.9
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.8e-08 62.8 79 40.5
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.0e-08 62.0 75 46.7
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.0e-08 61.6 72 41.7
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 4.0e-08 61.6 102 43.1
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 6.7e-08 60.8 81 43.2
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 6.7e-08 60.8 42 61.9
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 6.7e-08 60.8 100 42.0
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 6.7e-08 60.8 55 56.4
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 6.7e-08 60.8 76 43.4
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 6.7e-08 60.8 81 44.4
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 8.8e-08 60.5 77 45.5
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 1.1e-07 60.1 77 41.6
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 2.0e-07 59.3 77 40.3
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.6e-07 58.9 78 44.9
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 4.4e-07 58.2 86 38.4
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 5.7e-07 57.8 86 43.0
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 5.7e-07 57.8 79 44.3
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 7.5e-07 57.4 43 60.5
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 7.5e-07 57.4 43 60.5
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 9.7e-07 57.0 88 38.6
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 9.7e-07 57.0 77 41.6
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 1.3e-06 56.6 79 39.2
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 1.3e-06 56.6 73 45.2
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.3e-06 56.6 84 42.9
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 1.3e-06 56.6 84 42.9
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.7e-06 56.2 79 40.5
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 2.2e-06 55.8 91 41.8
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 2.2e-06 55.8 78 42.3
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 2.8e-06 55.5 42 59.5
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.8e-06 55.5 44 59.1
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.8e-06 55.5 79 40.5
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.7e-06 55.1 44 59.1
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 3.7e-06 55.1 44 59.1
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.7e-06 55.1 81 42.0
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 3.7e-06 55.1 81 42.0
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 3.7e-06 55.1 84 42.9
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 3.7e-06 55.1 77 40.3
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 4.8e-06 54.7 77 39.0
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 4.8e-06 54.7 77 46.8
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 4.8e-06 54.7 79 43.0
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 4.8e-06 54.7 77 40.3
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 8.2e-06 53.9 78 47.4


User provided reference genes

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