Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 0.0e+00 1416.7 727 100.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 7.7e-263 910.6 736 65.4
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 5.7e-258 894.4 737 63.9
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 8.2e-257 890.6 733 65.1
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 8.5e-254 880.6 734 62.9
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 4.4e-250 868.2 733 61.9
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.2e-244 850.1 733 61.8
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.0e-243 847.0 730 62.3
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 4.0e-243 845.1 737 61.6
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 6.8e-243 844.3 746 60.2
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 8.8e-243 844.0 736 61.5
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.4e-242 842.0 730 60.8
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 4.4e-242 841.6 729 60.5
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 2.8e-241 839.0 734 60.5
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.1e-240 837.0 730 61.0
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.1e-240 835.1 737 59.7
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.1e-240 835.1 730 61.1
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.5e-239 832.0 738 59.9
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 3.8e-238 828.6 737 60.7
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.5e-237 825.9 741 59.5
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.8e-235 819.7 730 60.3
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.6e-234 815.8 732 60.1
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 5.7e-234 814.7 731 60.1
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 3.7e-233 812.0 732 58.2
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 2.4e-232 809.3 731 59.1
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 3.1e-232 808.9 730 58.9
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.7e-231 805.8 731 59.0
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 5.9e-231 804.7 737 58.9
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 6.6e-230 801.2 729 58.8
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 3.3e-229 798.9 736 57.7
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.4e-227 793.5 735 58.5
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.2e-224 782.3 730 58.6
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 2.0e-223 779.6 732 57.2
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 3.0e-222 775.8 729 57.8
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.1e-221 773.9 742 55.1
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 4.3e-221 771.9 730 56.6
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 4.7e-220 768.5 770 55.3
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 4.0e-219 765.4 741 55.3
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.5e-218 763.5 737 56.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.5e-218 763.5 729 57.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 2.6e-218 762.7 742 55.8
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.2e-217 759.6 753 53.1
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 2.2e-217 759.6 730 57.7
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 3.7e-217 758.8 729 56.7
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 6.4e-217 758.1 729 57.5
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.1e-216 757.3 728 57.4
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.4e-216 756.9 732 54.9
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.9e-216 756.5 735 56.2
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 2.4e-216 756.1 744 55.0
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.1e-216 755.4 745 54.5
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.2e-216 754.2 729 56.5
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.1e-215 753.1 729 56.2
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 3.5e-215 752.3 725 54.5
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 2.3e-214 749.6 742 54.3
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 3.0e-214 749.2 744 54.6
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.9e-214 748.8 728 56.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.1e-213 747.3 730 54.1
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.5e-213 746.9 726 55.0
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.3e-213 745.7 733 56.2
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 9.5e-213 744.2 743 54.6
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 2.1e-212 743.0 737 54.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.1e-212 743.0 728 55.9
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.1e-211 740.7 648 62.0
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.4e-211 740.3 743 53.7
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 3.1e-211 739.2 779 52.2
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 6.8e-211 738.0 634 61.7
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-210 737.3 737 54.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.5e-210 734.6 752 54.4
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.9e-208 729.9 758 52.5
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 7.1e-208 728.0 737 54.8
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.0e-206 724.2 752 53.7
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.0e-206 722.6 736 53.3
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 4.7e-204 715.3 733 53.6
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.7e-204 715.3 733 53.6
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 6.2e-204 714.9 732 54.5
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 8.1e-204 714.5 752 53.5
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 7.6e-202 708.0 728 54.4
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 9.9e-202 707.6 744 52.6
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 8.4e-201 704.5 726 52.8
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.9e-200 703.4 724 52.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 7.3e-197 691.4 727 52.0
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.4e-195 687.2 726 52.8
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 4.0e-195 685.6 729 50.9
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 9.0e-195 684.5 679 54.3
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 4.4e-194 682.2 766 50.8
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 4.4e-194 682.2 743 51.0
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 9.9e-194 681.0 750 52.0
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 8.4e-193 677.9 750 52.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 4.2e-192 675.6 721 52.4
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.6e-191 673.7 733 51.7
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.0e-190 671.0 750 51.9
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 3.3e-189 666.0 636 56.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.3e-189 665.6 729 50.6
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 6.2e-188 661.8 725 49.7
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.1e-187 661.0 650 56.5
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.8e-187 660.2 687 53.0
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.5e-186 657.1 752 51.2
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 6.4e-185 651.7 765 49.4
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 7.1e-184 648.3 751 49.8
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 4.6e-183 645.6 606 57.9
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.3e-182 643.3 648 52.2
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.9e-181 640.2 727 48.7
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 2.7e-175 619.8 682 50.7
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 3.7e-172 609.4 729 46.8
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.3e-169 600.9 728 47.3
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 8.4e-169 598.2 647 53.6
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 4.6e-167 592.4 549 59.9
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 4.6e-167 592.4 651 49.6
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.6e-167 592.4 821 44.6
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.7e-161 573.9 529 55.6
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 9.4e-160 568.2 728 45.1
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 3.7e-156 556.2 724 45.7
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 3.3e-149 533.1 770 41.8
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 6.7e-142 508.8 677 44.3
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.0e-141 507.3 705 44.3
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 2.4e-123 447.2 830 35.8
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 7.5e-117 425.6 748 39.0
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.4e-115 421.4 759 37.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.4e-115 420.6 726 38.2
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 4.1e-115 419.9 772 37.7
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.4e-91 340.9 886 31.2
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 4.4e-85 320.1 483 37.7
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 9.3e-83 312.4 570 36.0
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.0e-73 280.8 467 37.3
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 5.6e-64 250.0 680 29.3
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.5e-61 240.4 443 36.6
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.5e-51 208.0 97 100.0
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.1e-50 204.9 225 49.3
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.4e-46 192.2 127 72.4
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 8.5e-44 183.0 222 42.3
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.1e-40 172.6 167 58.1
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.1e-40 172.6 314 36.0
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.2e-39 166.4 135 58.5
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.7e-36 158.7 210 41.9
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 2.3e-33 148.3 98 74.5
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 7.0e-30 136.7 181 40.3
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.5e-28 129.8 95 63.2
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 6.1e-26 123.6 147 48.3
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 5.5e-19 100.5 103 56.3
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 5.7e-16 90.5 264 33.0
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 3.8e-12 77.8 74 51.4
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 7.2e-11 73.6 174 31.0
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.6e-10 72.4 421 25.7
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 2.3e-09 68.6 242 29.8
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 3.4e-08 64.7 151 34.4
SMO115G0301 Selaginella moellendorffii HOM05D001312 ORTHO05D001832 4.9e-07 60.8 159 30.2
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 1.1e-06 59.7 81 35.8
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.8e-06 58.9 78 37.2
Lj2C292T8 Lonicera japonica HOM05D001439 ORTHO05D002726 2.4e-06 58.5 78 37.2
VMungo0540G1437 Vigna mungo HOM05D001439 ORTHO05D002726 2.4e-06 58.5 106 36.8
SEGI_08770 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 3.1e-06 58.2 166 29.5
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 4.1e-06 57.8 78 35.9
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 5.4e-06 57.4 225 27.6
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 7.0e-06 57.0 56 46.4
Phvul.006G182000 Phaseolus vulgaris HOM05D001439 ORTHO05D002726 9.2e-06 56.6 106 37.7


User provided reference genes

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