Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 3.0e-117 425.2 219 100.0
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.8e-56 222.2 194 63.9
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.1e-55 220.7 194 63.4
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 7.2e-55 218.0 186 65.1
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.1e-54 216.5 194 63.9
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 2.7e-54 216.1 194 63.9
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 6.1e-54 214.9 194 63.4
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.3e-53 213.8 183 65.0
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 2.3e-53 213.0 194 62.9
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 3.9e-53 212.2 194 60.8
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 5.1e-53 211.8 194 61.3
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 1.9e-52 209.9 172 66.3
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 2.5e-52 209.5 180 64.4
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 3.3e-52 209.1 194 62.4
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 4.3e-52 208.8 178 65.2
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 5.7e-52 208.4 177 63.8
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 2.2e-51 206.5 172 64.5
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.2e-51 206.5 172 64.5
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.2e-51 206.5 183 65.6
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 2.8e-51 206.1 172 63.4
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 3.7e-51 205.7 180 61.7
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 4.8e-51 205.3 195 60.0
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 4.8e-51 205.3 177 62.1
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 6.3e-51 204.9 184 62.5
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 8.2e-51 204.5 180 60.6
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 2.4e-50 203.0 173 63.6
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 3.1e-50 202.6 172 65.1
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 4.1e-50 202.2 175 62.9
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 5.3e-50 201.8 183 62.3
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.3e-50 201.8 183 62.3
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.3e-50 201.8 183 62.3
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 6.9e-50 201.4 172 64.0
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 9.1e-50 201.1 172 64.0
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.0e-49 199.9 184 59.8
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.0e-49 199.9 183 61.7
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 3.4e-49 199.1 183 59.6
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 3.4e-49 199.1 172 61.6
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 4.5e-49 198.7 175 61.7
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.0e-48 197.6 178 60.1
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.0e-48 197.6 183 59.6
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.7e-48 196.8 189 58.2
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.7e-48 196.8 183 59.0
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 2.2e-48 196.4 172 61.6
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 2.9e-48 196.1 183 59.0
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.8e-48 195.7 183 60.7
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 5.0e-48 195.3 183 59.6
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 5.0e-48 195.3 172 61.0
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 6.5e-48 194.9 184 60.9
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 6.5e-48 194.9 197 55.3
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 8.5e-48 194.5 183 58.5
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.1e-47 194.1 172 61.0
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 1.4e-47 193.7 183 56.8
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.9e-47 193.4 186 59.1
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 2.5e-47 193.0 183 57.4
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 3.2e-47 192.6 183 56.8
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 4.2e-47 192.2 183 57.9
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 4.2e-47 192.2 183 57.9
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 5.5e-47 191.8 183 56.8
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 5.5e-47 191.8 182 58.8
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 7.2e-47 191.4 178 59.0
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 7.2e-47 191.4 180 57.2
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.2e-46 190.7 186 59.7
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.6e-46 190.3 179 57.0
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 2.7e-46 189.5 178 56.2
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 2.7e-46 189.5 191 57.6
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 2.7e-46 189.5 160 66.2
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.7e-46 189.5 183 57.4
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 4.6e-46 188.7 172 60.5
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 6.1e-46 188.3 186 59.7
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 6.1e-46 188.3 183 59.0
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 7.9e-46 188.0 181 55.8
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.0e-45 187.6 183 55.7
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.0e-45 187.6 183 55.7
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.0e-45 187.6 183 55.7
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.0e-45 187.6 170 60.0
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.8e-45 186.8 183 57.9
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 1.8e-45 186.8 183 59.6
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 2.3e-45 186.4 185 56.2
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 3.0e-45 186.0 183 55.7
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.1e-45 185.3 180 57.8
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.1e-45 185.3 183 56.3
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 6.7e-45 184.9 160 62.5
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 6.7e-45 184.9 183 56.3
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 1.5e-44 183.7 172 61.6
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 2.6e-44 183.0 209 52.6
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 2.6e-44 183.0 172 55.8
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.3e-44 182.6 169 59.2
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 7.4e-44 181.4 169 59.2
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.7e-43 180.3 152 65.1
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.7e-43 180.3 176 55.1
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.4e-42 177.2 152 63.2
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 1.4e-42 177.2 188 53.2
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 3.1e-42 176.0 170 58.2
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 3.1e-42 176.0 170 58.2
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 5.3e-42 175.3 177 55.4
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.3e-42 175.3 182 54.4
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 5.3e-42 175.3 170 57.6
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 9.1e-42 174.5 179 57.0
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.0e-41 173.3 170 56.5
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 1.7e-40 170.2 152 62.5
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.1e-38 163.3 174 50.6
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 3.6e-38 162.5 153 59.5
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 3.6e-38 162.5 172 54.7
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 2.6e-33 146.4 140 59.3
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 7.7e-33 144.8 177 45.8
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 3.7e-27 125.9 153 47.7
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.2e-25 120.9 76 73.7
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 2.0e-25 120.2 176 39.2
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.5e-25 119.4 88 68.2
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.9e-23 113.6 76 71.1
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.5e-23 112.1 89 66.3
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.3e-21 106.7 181 37.6
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.0e-20 103.6 75 70.7
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 8.3e-19 98.2 167 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 7.7e-17 91.7 204 31.4
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 6.1e-14 82.0 168 36.3
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.1e-10 71.2 100 46.0
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 4.1e-10 69.3 92 43.5
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.6e-09 67.4 178 27.0
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 5.0e-08 62.4 165 29.7
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 2.1e-06 57.0 193 24.9


User provided reference genes

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