Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 0.0e+00 1278.1 682 100.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 2.1e-169 600.1 609 56.7
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.4e-168 597.4 607 57.7
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 1.4e-168 597.4 613 56.3
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 6.7e-168 595.1 607 57.2
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 2.5e-167 593.2 607 57.3
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 1.3e-166 590.9 605 56.9
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 3.7e-166 589.3 611 55.6
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 6.3e-166 588.6 607 56.7
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 3.4e-164 582.8 601 56.2
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 2.2e-163 580.1 611 56.6
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 5.5e-162 575.5 594 56.6
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 2.0e-159 567.0 602 54.2
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 2.0e-159 567.0 613 55.3
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 3.3e-159 566.2 602 54.5
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 9.7e-159 564.7 603 54.1
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.4e-157 560.1 589 54.5
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.4e-157 560.1 589 54.5
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 1.2e-156 557.8 603 53.7
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 1.2e-156 557.8 603 54.6
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 1.5e-156 557.4 610 54.4
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 2.6e-156 556.6 591 54.3
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 2.9e-155 553.1 599 54.4
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.8e-155 552.7 603 54.2
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 6.5e-155 552.0 591 54.3
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 1.9e-154 550.4 595 53.9
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 2.5e-154 550.1 592 53.7
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.2e-154 549.7 610 53.9
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 4.2e-154 549.3 602 53.2
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 6.1e-153 545.4 601 52.7
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 6.7e-152 542.0 601 52.2
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 5.7e-151 538.9 612 52.5
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.2e-147 526.9 609 52.5
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 8.5e-147 525.0 610 51.5
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 8.5e-147 525.0 602 51.0
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 6.8e-144 515.4 610 51.6
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 3.4e-143 513.1 602 51.3
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 8.3e-142 508.4 620 50.6
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.3e-139 501.1 590 51.4
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.7e-139 500.7 622 49.2
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 3.8e-139 499.6 598 50.5
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 5.5e-138 495.7 603 49.4
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 1.4e-136 491.1 610 50.7
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.4e-136 491.1 597 50.8
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 3.0e-136 490.0 606 46.9
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 4.0e-136 489.6 599 49.9
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 8.8e-136 488.4 593 50.4
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 1.5e-135 487.6 604 46.4
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 2.6e-135 486.9 596 49.3
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 8.3e-134 481.9 602 46.8
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.1e-133 481.5 609 46.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.7e-131 474.2 605 46.9
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.3e-131 473.8 593 49.7
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 3.3e-130 469.9 588 48.1
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 4.2e-130 469.5 531 52.7
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 7.2e-130 468.8 604 46.5
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 4.7e-129 466.1 609 46.1
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 2.2e-126 457.2 610 46.9
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 2.4e-125 453.8 596 47.8
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 3.2e-125 453.4 603 47.3
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.7e-123 447.6 593 47.6
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 9.5e-122 441.8 681 41.9
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.2e-119 434.9 607 45.1
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 7.0e-117 425.6 561 47.8
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 8.9e-112 408.7 432 53.7
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 9.8e-111 405.2 692 39.7
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 2.4e-109 400.6 607 42.3
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 9.2e-109 398.7 598 42.1
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 6.6e-107 392.5 558 45.2
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 7.3e-106 389.0 593 41.8
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.6e-105 387.9 597 42.7
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.6e-105 387.9 613 42.1
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 8.3e-102 375.6 608 40.3
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 4.6e-100 369.8 605 40.7
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 3.1e-96 357.1 504 45.2
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.2e-95 355.1 487 44.8
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.2e-94 350.9 497 44.7
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 2.9e-94 350.5 495 44.6
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 3.2e-93 347.1 494 43.9
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 2.1e-92 344.4 494 42.9
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 2.5e-90 337.4 590 38.5
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 3.1e-88 330.5 514 41.8
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 5.1e-83 313.2 433 46.0
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 8.7e-83 312.4 499 41.1
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 4.8e-81 306.6 256 65.2
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.9e-77 294.7 498 40.8
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 4.2e-77 293.5 340 50.6
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.5e-74 284.3 263 62.7
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 3.1e-72 277.3 416 43.3
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.6e-71 274.2 265 55.5
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.2e-68 265.4 426 39.9
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 4.3e-58 230.3 393 36.9
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 3.7e-57 227.3 592 31.4
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 3.1e-56 224.2 393 38.4
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 1.5e-50 205.3 189 59.8
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 2.1e-44 184.9 351 34.8
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.4e-43 182.2 172 60.5
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.7e-41 175.3 260 44.2
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 8.0e-36 156.4 253 43.1
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 3.1e-32 144.4 249 41.0
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.2e-28 132.5 156 50.0
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.5e-26 125.6 218 38.1
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 2.9e-22 111.3 118 54.2
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 2.5e-21 108.2 180 41.7
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.2e-19 100.5 99 53.5
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 9.8e-18 96.3 122 45.1
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 2.8e-17 94.7 64 81.2
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.7e-15 86.7 74 54.1
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.3e-13 81.3 61 68.9
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.8e-12 78.2 96 43.8
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.0e-12 76.6 100 45.0
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 6.4e-09 67.0 58 63.8
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 8.3e-09 66.6 58 55.2
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.1e-08 66.2 65 61.5
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 9.2e-08 63.2 58 53.4
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 1.6e-07 62.4 82 47.6
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 4.6e-07 60.8 58 51.7
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.3e-06 59.3 59 57.6
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 1.7e-06 58.9 146 34.2


User provided reference genes

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