Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc360.4 Carica papaya HOM05D003068 ORTHO05D003444 0.0e+00 1645.6 943 100.0
Cpa.g.sc360.6 Carica papaya HOM05D003068 ORTHO05D003444 2.8e-273 945.7 910 64.8
Thecc.04G040800 Theobroma cacao HOM05D003068 ORTHO05D003444 4.0e-187 659.4 926 51.7
COL.COLO4_13296 Corchorus olitorius HOM05D003068 ORTHO05D003444 9.2e-184 648.3 931 47.0
Duzib147G0957 Durio zibethinus HOM05D003068 ORTHO05D003444 2.1e-172 610.5 930 45.3
Duzib264G0464 Durio zibethinus HOM05D003068 ORTHO05D003444 4.2e-168 596.3 928 47.5
Gorai.006G044200 Gossypium raimondii HOM05D003068 ORTHO05D003444 3.0e-166 590.1 929 50.5
Atru.chr6.2601 Acer truncatum HOM05D003068 ORTHO05D003444 1.1e-165 588.2 944 51.5
QL02p070794 Quercus lobata HOM05D003068 ORTHO05D003444 1.1e-163 581.6 936 44.6
Gohir.D09G038700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 1.4e-163 581.3 933 49.9
GSVIVG01033051001 Vitis vinifera HOM05D003068 ORTHO05D003444 4.0e-163 579.7 937 44.8
Gohir.A09G037700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 2.6e-162 577.0 946 47.8
Gohir.A11G067700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 2.3e-150 537.3 887 48.7
Gorai.007G071800 Gossypium raimondii HOM05D003068 ORTHO05D003444 5.7e-149 532.7 905 47.7
Gohir.D11G066300 Gossypium hirsutum HOM05D003068 ORTHO05D003444 4.5e-146 523.1 910 47.1
Gohir.A11G062500 Gossypium hirsutum HOM05D003068 ORTHO05D003444 1.7e-145 521.2 927 47.2
Gorai.007G071700 Gossypium raimondii HOM05D003068 ORTHO05D003444 3.8e-145 520.0 889 49.0
Potri.001G326700 Populus trichocarpa HOM05D003068 ORTHO05D003444 2.5e-144 517.3 930 45.6
Gohir.D11G058700 Gossypium hirsutum HOM05D003068 ORTHO05D003444 3.5e-143 513.5 911 46.8
Potri.001G326500 Populus trichocarpa HOM05D003068 ORTHO05D003444 3.9e-142 510.0 932 45.2
Sabra16G0209000 Salix brachista HOM05D003068 ORTHO05D003444 4.8e-140 503.1 931 45.0
TWI34G0873 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 9.0e-139 498.8 916 44.9
Sabra16G0209200 Salix brachista HOM05D003068 ORTHO05D003444 2.2e-137 494.2 932 44.4
Ciclev10014024m.g Citrus clementina HOM05D003068 ORTHO05D003444 6.5e-137 492.7 961 47.5
TWI32G0157 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 2.3e-134 484.2 932 45.3
Glyma.19G095700 Glycine max HOM05D003068 ORTHO05D003444 2.5e-133 480.7 921 40.0
TAR629G1943 Trochodendron aralioides HOM05D003068 ORTHO05D003444 1.4e-128 464.9 947 39.3
TAR371G1274 Trochodendron aralioides HOM05D003068 ORTHO05D003444 5.5e-128 463.0 973 37.7
COL.COLO4_13295 Corchorus olitorius HOM05D003068 ORTHO05D003444 7.2e-128 462.6 924 36.8
arahy.Tifrunner.gnm1.ann1.V6C9BH Arachis hypogaea HOM05D003068 ORTHO05D003444 3.3e-125 453.8 914 40.0
arahy.Tifrunner.gnm1.ann1.51F4P8 Arachis hypogaea HOM05D003068 ORTHO05D003444 1.7e-124 451.4 914 39.8
Lalb_Chr00c01g0403831 Lupinus albus HOM05D003068 ORTHO05D003444 3.8e-121 440.3 911 38.2
Ca_26730_v3 Cicer arietinum L. HOM05D003068 ORTHO05D003444 8.5e-121 439.1 930 38.8
Manes.04G088200 Manihot esculenta HOM05D003068 ORTHO05D003444 1.9e-120 438.0 942 46.5
TPR.G8567 Trifolium pratense HOM05D003068 ORTHO05D003444 1.0e-118 432.2 966 36.2
Glyma.16G053500 Glycine max HOM05D003068 ORTHO05D003444 1.8e-118 431.4 911 38.7
Lj1g0008700 Lotus japonicus HOM05D003068 ORTHO05D003444 3.0e-118 430.6 909 38.4
Nn4g22239 Nelumbo nucifera HOM05D003068 ORTHO05D003444 2.0e-117 427.9 943 39.3
MBI07_g02007_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 2.4e-115 421.0 946 38.8
TWI34G1549 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 4.1e-115 420.2 908 42.3
Potri.017G069220 Populus trichocarpa HOM05D003068 ORTHO05D003444 1.0e-110 405.6 915 44.8
Medtr7g027680 Medicago truncatula HOM05D003068 ORTHO05D003444 9.8e-109 399.1 961 34.8
Prupe.3G309100 Prunus persica HOM05D003068 ORTHO05D003444 1.7e-108 398.3 916 41.2
Lalb_Chr02g0156781 Lupinus albus HOM05D003068 ORTHO05D003444 7.0e-107 392.9 920 41.3
Sabra17G0058900 Salix brachista HOM05D003068 ORTHO05D003444 1.9e-104 384.8 927 42.5
Lalb_Chr22g0360251 Lupinus albus HOM05D003068 ORTHO05D003444 3.2e-104 384.0 909 36.3
Nn3g16377 Nelumbo nucifera HOM05D003068 ORTHO05D003444 1.2e-101 375.6 934 34.8
CSS0019564 Camellia sinensis var. sinensis HOM05D003068 ORTHO05D003444 8.3e-100 369.4 942 35.6
MD17G1002800 Malus domestica HOM05D003068 ORTHO05D003444 2.0e-98 364.8 897 42.3
Lalb_Chr06g0173741 Lupinus albus HOM05D003068 ORTHO05D003444 2.7e-98 364.4 928 39.0
Phvul.001G089500 Phaseolus vulgaris HOM05D003068 ORTHO05D003444 1.7e-97 361.7 907 35.6
Lalb_Chr21g0316891 Lupinus albus HOM05D003068 ORTHO05D003444 1.1e-96 359.0 678 40.7
Aqoxy5G03256 Aquilegia oxysepala HOM05D003068 ORTHO05D003444 1.2e-95 355.5 692 39.6
Dinv11705 Davidia involucrata HOM05D003068 ORTHO05D003444 2.6e-93 347.8 932 35.6
PSO478G2322 Papaver somniferum HOM05D003068 ORTHO05D003444 4.9e-92 343.6 951 35.1
RcHm_v2.0_Chr2g0176001 Rosa chinensis HOM05D003068 ORTHO05D003444 1.1e-91 342.4 679 40.4
MD09G1007900 Malus domestica HOM05D003068 ORTHO05D003444 3.9e-89 334.0 917 41.1
PSO017G0558 Papaver somniferum HOM05D003068 ORTHO05D003444 9.5e-88 329.3 949 34.2
CiPaw.05G106000 Carya illinoinensis HOM05D003068 ORTHO05D003444 8.0e-87 326.2 913 35.2
Cfa009397 Carpinus fangiana HOM05D003068 ORTHO05D003444 6.8e-86 323.2 911 33.8
Actinidia39791 Actinidia chinensis HOM05D003068 ORTHO05D003444 3.2e-83 314.3 935 33.2
Manes.13G007800 Manihot esculenta HOM05D003068 ORTHO05D003444 4.6e-82 310.5 918 33.1
QL03p051306 Quercus lobata HOM05D003068 ORTHO05D003444 5.0e-81 307.0 914 36.0
Psat3g160840 Pisum sativum HOM05D003068 ORTHO05D003444 8.6e-81 306.2 652 37.4
RcHm_v2.0_Chr4g0429641 Rosa chinensis HOM05D003068 ORTHO05D003444 7.3e-80 303.1 909 33.4
FvH4_4g23270 Fragaria vesca HOM05D003068 ORTHO05D003444 1.6e-79 302.0 692 35.5
MD16G1124000 Malus domestica HOM05D003068 ORTHO05D003444 4.0e-78 297.4 898 33.1
FAN07G2860 Fragaria x ananassa HOM05D003068 ORTHO05D003444 2.0e-77 295.0 697 35.3
FAN12G3359 Fragaria x ananassa HOM05D003068 ORTHO05D003444 2.0e-77 295.0 910 33.0
FAN17G2511 Fragaria x ananassa HOM05D003068 ORTHO05D003444 5.8e-77 293.5 910 33.3
Prupe.1G221600 Prunus persica HOM05D003068 ORTHO05D003444 9.8e-77 292.7 915 33.2
MBI11_g31939_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 2.2e-76 291.6 937 30.6
Actinidia08047 Actinidia chinensis HOM05D003068 ORTHO05D003444 2.7e-74 284.6 691 35.0
CSS0012326 Camellia sinensis var. sinensis HOM05D003068 ORTHO05D003444 4.6e-74 283.9 938 32.4
Rhsim12G0023100 Rhododendron simsii HOM05D003068 ORTHO05D003444 3.0e-73 281.2 692 34.4
Ciclev10030493m.g Citrus clementina HOM05D003068 ORTHO05D003444 1.1e-72 279.3 901 30.9
Haze_12457 Corylus avellana HOM05D003068 ORTHO05D003444 1.1e-72 279.3 657 33.6
MBI11_g38271_MAGBIO Magnolia biondii HOM05D003068 ORTHO05D003444 2.5e-72 278.1 650 36.2
Sopen05g012000 Solanum pennellii HOM05D003068 ORTHO05D003444 3.3e-72 277.7 902 30.4
Actinidia09620 Actinidia chinensis HOM05D003068 ORTHO05D003444 7.3e-72 276.6 692 34.1
MD13G1123200 Malus domestica HOM05D003068 ORTHO05D003444 1.2e-71 275.8 686 34.4
vmacro16090 Vaccinium macrocarpon HOM05D003068 ORTHO05D003444 2.1e-71 275.0 667 35.7
Lj3C1074T4 Lonicera japonica HOM05D003068 ORTHO05D003444 8.1e-71 273.1 924 31.6
Sopen05g012020 Solanum pennellii HOM05D003068 ORTHO05D003444 1.1e-70 272.7 903 30.8
Solyc05g015930.4 Solanum lycopersicum HOM05D003068 ORTHO05D003444 3.1e-70 271.2 680 33.1
PGSC0003DMG400010805 Solanum tuberosum HOM05D003068 ORTHO05D003444 4.4e-69 267.3 901 29.5
Lj6A832T38 Lonicera japonica HOM05D003068 ORTHO05D003444 5.8e-69 266.9 694 33.6
Dinv17596 Davidia involucrata HOM05D003068 ORTHO05D003444 8.4e-68 263.1 794 34.6
DCAR_024651 Daucus carota HOM05D003068 ORTHO05D003444 2.4e-67 261.5 685 35.3
Rhsim12G0023200 Rhododendron simsii HOM05D003068 ORTHO05D003444 3.2e-67 261.2 692 32.1
Nitab4.5_0002480g0020 Nicotiana tabacum HOM05D003068 ORTHO05D003444 5.4e-67 260.4 687 32.6
Nitab4.5_0000039g0080 Nicotiana tabacum HOM05D003068 ORTHO05D003444 9.2e-67 259.6 668 32.5
Solyc05g015920.3 Solanum lycopersicum HOM05D003068 ORTHO05D003444 9.2e-67 259.6 683 33.5
Manes.12G007400 Manihot esculenta HOM05D003068 ORTHO05D003444 1.2e-66 259.2 689 33.4
FvH4_6g53851 Fragaria vesca HOM05D003068 ORTHO05D003444 4.6e-66 257.3 666 36.5
FAN14G4132 Fragaria x ananassa HOM05D003068 ORTHO05D003444 6.0e-66 256.9 666 36.5
vmacro01043 Vaccinium macrocarpon HOM05D003068 ORTHO05D003444 6.0e-66 256.9 636 34.1
FAN05G1891 Fragaria x ananassa HOM05D003068 ORTHO05D003444 1.7e-65 255.4 666 36.3
PGR102G3269 Punica granatum HOM05D003068 ORTHO05D003444 5.1e-65 253.8 691 33.1
Oeu044470.1 Olea europaea HOM05D003068 ORTHO05D003444 4.3e-64 250.8 679 32.0
Cc11_g17310 Coffea canephora HOM05D003068 ORTHO05D003444 7.3e-64 250.0 696 32.6
TWI18G0019 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 9.6e-64 249.6 895 31.2
FAN02G2301 Fragaria x ananassa HOM05D003068 ORTHO05D003444 4.7e-63 247.3 666 36.8
CAN.G31.3 Capsicum annuum HOM05D003068 ORTHO05D003444 1.1e-62 246.1 685 31.7
SalBow2G3600 Salvia bowleyana HOM05D003068 ORTHO05D003444 1.4e-62 245.7 671 33.4
Nitab4.5_0001771g0100 Nicotiana tabacum HOM05D003068 ORTHO05D003444 1.8e-62 245.4 700 30.9
TWI36G0350 Tripterygium wilfordii HOM05D003068 ORTHO05D003444 8.9e-62 243.0 910 30.1
Sc14g0009170 Simmondsia chinensis HOM05D003068 ORTHO05D003444 3.4e-61 241.1 701 33.1
Duzib251G0076 Durio zibethinus HOM05D003068 ORTHO05D003444 7.6e-61 240.0 881 32.0
CAN.G75.8 Capsicum annuum HOM05D003068 ORTHO05D003444 9.9e-61 239.6 695 32.1
FAN09G1608 Fragaria x ananassa HOM05D003068 ORTHO05D003444 4.9e-60 237.3 671 35.6
CANSAT01G2060 Cannabis sativa HOM05D003068 ORTHO05D003444 2.4e-59 235.0 687 33.3
Duzib248G1470 Durio zibethinus HOM05D003068 ORTHO05D003444 5.4e-59 233.8 688 33.6
Nitab4.5_0004878g0010 Nicotiana tabacum HOM05D003068 ORTHO05D003444 5.4e-59 233.8 697 30.7
CANSAT01G1374 Cannabis sativa HOM05D003068 ORTHO05D003444 1.2e-58 232.6 683 33.4
CiPaw.06G106100 Carya illinoinensis HOM05D003068 ORTHO05D003444 2.7e-58 231.5 907 31.2
Thecc.02G200100 Theobroma cacao HOM05D003068 ORTHO05D003444 3.5e-58 231.1 887 30.9
Oeu011351.2 Olea europaea HOM05D003068 ORTHO05D003444 4.6e-58 230.7 682 31.1
Peaxi162Scf00128g01613 Petunia axillaris HOM05D003068 ORTHO05D003444 8.7e-57 226.5 685 29.5
PSO478G5081 Papaver somniferum HOM05D003068 ORTHO05D003444 1.1e-56 226.1 902 31.8
AUR62028892 Chenopodium quinoa HOM05D003068 ORTHO05D003444 1.3e-55 222.6 688 31.4
SGA_v2.0_scaffold228G43258 Striga asiatica HOM05D003068 ORTHO05D003444 1.6e-55 222.2 698 32.1
PSO017G1912 Papaver somniferum HOM05D003068 ORTHO05D003444 2.1e-55 221.9 907 31.4
Hund25484 Selenicereus undatus HOM05D003068 ORTHO05D003444 2.8e-55 221.5 710 31.5
Sed0000746 Sechium edule HOM05D003068 ORTHO05D003444 3.6e-55 221.1 687 32.0
Sed0008887 Sechium edule HOM05D003068 ORTHO05D003444 3.6e-55 221.1 684 32.5
ClCG06G001930 Citrullus lanatus HOM05D003068 ORTHO05D003444 8.1e-55 219.9 670 31.8
TAR374G1567 Trochodendron aralioides HOM05D003068 ORTHO05D003444 1.4e-54 219.2 488 36.9
Oeu044469.1 Olea europaea HOM05D003068 ORTHO05D003444 1.8e-54 218.8 680 29.4
Migut.K01012 Erythranthe guttata HOM05D003068 ORTHO05D003444 2.6e-53 214.9 680 30.6
EL10Ac6g13546 Beta vulgaris HOM05D003068 ORTHO05D003444 9.9e-53 213.0 948 29.4
AUR62005661 Chenopodium quinoa HOM05D003068 ORTHO05D003444 1.4e-51 209.1 725 29.7
Eucgr.B03531 Eucalyptus grandis HOM05D003068 ORTHO05D003444 2.4e-51 208.4 687 31.7
CsaV3_6G007980 Cucumis sativus L. HOM05D003068 ORTHO05D003444 3.5e-50 204.5 672 31.7
MELO3C022336.2 Cucumis melo HOM05D003068 ORTHO05D003444 1.0e-49 203.0 673 31.5
Hund06111 Selenicereus undatus HOM05D003068 ORTHO05D003444 3.0e-49 201.4 694 29.7
Hma1.2p1_0275F.1_g110540 Hydrangea macrophylla HOM05D003068 ORTHO05D003444 6.6e-49 200.3 487 32.2
Ah.02g131010 Amaranthus hybridus HOM05D003068 ORTHO05D003444 1.5e-48 199.1 909 26.4
Sc11g0000320 Simmondsia chinensis HOM05D003068 ORTHO05D003444 9.6e-48 196.4 685 30.5
SGA_v2.0_scaffold46G17427 Striga asiatica HOM05D003068 ORTHO05D003444 9.6e-48 196.4 691 29.1
Actinidia30621 Actinidia chinensis HOM05D003068 ORTHO05D003444 5.5e-43 180.6 568 31.5
unitig_749.g13315 Utricularia gibba HOM05D003068 ORTHO05D003444 5.5e-43 180.6 688 27.5
Atru.chr11.2377 Acer truncatum HOM05D003068 ORTHO05D003444 1.2e-42 179.5 486 33.5
Sc04g0010350 Simmondsia chinensis HOM05D003068 ORTHO05D003444 1.2e-42 179.5 563 31.3
ECA233G3893 Erigeron canadensis HOM05D003068 ORTHO05D003444 5.1e-41 174.1 675 28.1
ATR0582G309 Amborella trichopoda HOM05D003068 ORTHO05D003444 4.0e-38 164.5 713 28.1
Aqoxy3G01640 Aquilegia oxysepala HOM05D003068 ORTHO05D003444 1.7e-36 159.1 673 27.5
TAR374G0446 Trochodendron aralioides HOM05D003068 ORTHO05D003444 3.8e-36 157.9 288 41.3
unitig_26.g10417 Utricularia gibba HOM05D003068 ORTHO05D003444 6.7e-33 147.1 659 26.1
Zm00001eb364080 Zea mays HOM05D003068 ORTHO05D003444 2.1e-31 142.1 677 26.4
Aa31LG3G14530 Aethionema arabicum HOM05D003068 ORTHO05D003444 2.0e-29 135.6 696 25.9
TAR454G0002 Trochodendron aralioides HOM05D000127 ORTHO05D003444 2.2e-28 132.1 142 57.0
HanXRQChr08g0210011 Helianthus annuus HOM05D003068 ORTHO05D003444 7.2e-27 127.1 635 26.9
THA.LOC104807415 Tarenaya hassleriana HOM05D003068 ORTHO05D003444 1.8e-25 122.5 675 26.4
HPP92_028597 Vanilla planifolia HOM05D003068 ORTHO05D003444 2.5e-24 118.6 387 27.9
AT1G24300 Arabidopsis thaliana HOM05D003068 ORTHO05D003444 4.3e-24 117.9 690 24.6
CARHR026790 Cardamine hirsuta HOM05D003068 ORTHO05D003444 1.4e-22 112.8 708 25.4
Zm00001eb364090 Zea mays HOM05D003068 ORTHO05D003444 1.2e-21 109.8 486 27.4
AL1G40620 Arabidopsis lyrata HOM05D003068 ORTHO05D003444 2.6e-21 108.6 696 24.6
CARHR027020 Cardamine hirsuta HOM05D003068 ORTHO05D003444 2.6e-21 108.6 695 25.3
CiPaw.03G058400 Carya illinoinensis HOM05D003068 ORTHO05D003444 2.6e-21 108.6 153 45.1
Atru.chr11.2378 Acer truncatum HOM05D003068 ORTHO05D003444 2.2e-20 105.5 154 40.9
CDE05G0933 Ceratophyllum demersum HOM05D003068 ORTHO05D003444 5.0e-20 104.4 605 26.9
CDE05G1424 Ceratophyllum demersum HOM05D003068 ORTHO05D003444 5.5e-19 100.9 671 25.3
Lsat_1_v5_gn_4_161 Lactuca sativa HOM05D003068 ORTHO05D003444 7.9e-18 97.1 692 24.6
HanXRQChr12g0362261 Helianthus annuus HOM05D003068 ORTHO05D003444 8.8e-17 93.6 603 25.0
Lj3A1076G35 Lonicera japonica HOM05D003068 ORTHO05D003444 3.3e-16 91.7 229 30.1
Lsat_1_v5_gn_4_221 Lactuca sativa HOM05D003068 ORTHO05D003444 1.7e-15 89.4 334 29.3
PGSC0003DMG400002362 Solanum tuberosum HOM05D003068 ORTHO05D003444 3.7e-15 88.2 194 39.7
Carub.0001s2609 Capsella rubella HOM05D003068 ORTHO05D003444 1.1e-14 86.7 691 24.2
HanXRQChr17g0568871 Helianthus annuus HOM05D003068 ORTHO05D003444 1.1e-14 86.7 305 29.2
AL1G40840 Arabidopsis lyrata HOM05D003068 ORTHO05D003444 3.1e-14 85.1 707 24.3
Thhalv10006556m.g Eutrema salsugineum HOM05D003068 ORTHO05D003444 3.1e-14 85.1 694 23.9
Carub.0001s2597 Capsella rubella HOM05D003068 ORTHO05D003444 4.5e-13 81.3 692 23.8
BolC3t19659H Brassica oleracea HOM05D003068 ORTHO05D003444 2.5e-11 75.5 734 24.0
Nn1g03771 Nelumbo nucifera HOM05D003068 ORTHO05D003444 1.3e-07 63.2 78 47.4
BcaC01g01619 Brassica carinata HOM05D003068 ORTHO05D003444 5.3e-06 57.8 730 22.5


User provided reference genes

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