Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc36.45 Carica papaya HOM05D007294 ORTHO05D009205 2.1e-49 198.7 104 100.0
Potri.002G085200 Populus trichocarpa HOM05D007294 ORTHO05D009205 2.0e-23 112.5 93 68.8
MD08G1165800 Malus domestica HOM05D007294 ORTHO05D009205 5.8e-23 110.9 97 68.0
CiPaw.06G028900 Carya illinoinensis HOM05D007294 ORTHO05D009205 1.3e-22 109.8 95 66.3
Prupe.1G500700 Prunus persica HOM05D007294 ORTHO05D009205 1.7e-22 109.4 98 63.3
COL.COLO4_12212 Corchorus olitorius HOM05D007294 ORTHO05D009205 1.9e-21 105.9 91 64.8
Manes.18G075800 Manihot esculenta HOM05D007294 ORTHO05D009205 1.9e-21 105.9 97 64.9
TAR628G0157 Trochodendron aralioides HOM05D007294 ORTHO05D009205 2.5e-21 105.5 93 65.6
Sabra02G0066700 Salix brachista HOM05D007294 ORTHO05D009205 5.5e-21 104.4 93 65.6
Nn5g28204 Nelumbo nucifera HOM05D007294 ORTHO05D009205 7.2e-21 104.0 93 63.4
QL09p035498 Quercus lobata HOM05D007294 ORTHO05D009205 7.2e-21 104.0 91 64.8
Ciclev10002717m.g Citrus clementina HOM05D007294 ORTHO05D009205 3.5e-20 101.7 93 60.2
Dinv40407 Davidia involucrata HOM05D007294 ORTHO05D009205 7.9e-20 100.5 95 61.1
RcHm_v2.0_Chr6g0295521 Rosa chinensis HOM05D007294 ORTHO05D009205 7.9e-20 100.5 94 62.8
Dinv27334 Davidia involucrata HOM05D007294 ORTHO05D009205 8.7e-19 97.1 96 60.4
FvH4_2g26680 Fragaria vesca HOM05D007294 ORTHO05D009205 8.7e-19 97.1 94 60.6
FAN15G3738 Fragaria x ananassa HOM05D007294 ORTHO05D009205 8.7e-19 97.1 94 60.6
FAN24G1632 Fragaria x ananassa HOM05D007294 ORTHO05D009205 8.7e-19 97.1 94 60.6
PGR042G2863 Punica granatum HOM05D007294 ORTHO05D009205 8.7e-19 97.1 92 62.0
Haze_00466 Corylus avellana HOM05D007294 ORTHO05D009205 1.5e-18 96.3 91 61.5
Eucgr.F03773 Eucalyptus grandis HOM05D007294 ORTHO05D009205 2.5e-18 95.5 99 60.6
Eucgr.F03776 Eucalyptus grandis HOM05D007294 ORTHO05D009205 2.5e-18 95.5 96 61.5
Atru.chr13.1423 Acer truncatum HOM05D007294 ORTHO05D009205 3.3e-18 95.1 87 60.9
Aqoxy6G00180 Aquilegia oxysepala HOM05D007294 ORTHO05D009205 3.3e-18 95.1 94 58.5
FAN20G0043 Fragaria x ananassa HOM05D007294 ORTHO05D009205 3.3e-18 95.1 94 59.6
TWI36G0375 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 3.3e-18 95.1 94 58.5
FAN27G2899 Fragaria x ananassa HOM05D007294 ORTHO05D009205 5.7e-18 94.4 87 63.2
CANSAT25G2515 Cannabis sativa HOM05D007294 ORTHO05D009205 1.3e-17 93.2 93 59.1
PSO528G0176 Papaver somniferum HOM05D007294 ORTHO05D009205 1.3e-17 93.2 94 59.6
Hma1.2p1_0186F.1_g081585 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 1.6e-17 92.8 99 58.6
Hma1.2p1_0186F.1_g081590 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 1.6e-17 92.8 99 58.6
Sed0003401 Sechium edule HOM05D007294 ORTHO05D009205 4.8e-17 91.3 91 58.2
vmacro12540 Vaccinium macrocarpon HOM05D007294 ORTHO05D009205 1.1e-16 90.1 78 57.7
Rhsim06G0104800 Rhododendron simsii HOM05D007294 ORTHO05D009205 3.1e-16 88.6 99 56.6
Hund16850 Selenicereus undatus HOM05D007294 ORTHO05D009205 5.3e-16 87.8 94 56.4
Glyma.06G111500 Glycine max HOM05D007294 ORTHO05D009205 6.9e-16 87.4 90 61.1
GSVIVG01008891001 Vitis vinifera HOM05D007294 ORTHO05D009205 6.9e-16 87.4 72 62.5
arahy.Tifrunner.gnm1.ann1.D4BK2C Arachis hypogaea HOM05D007294 ORTHO05D009205 1.2e-15 86.7 93 58.1
arahy.Tifrunner.gnm1.ann1.NH3KYE Arachis hypogaea HOM05D007294 ORTHO05D009205 1.2e-15 86.7 93 58.1
Thecc.08G122800 Theobroma cacao HOM05D007294 ORTHO05D009205 1.2e-15 86.7 91 52.7
Lalb_Chr11g0065821 Lupinus albus HOM05D007294 ORTHO05D009205 1.5e-15 86.3 59 72.9
ClCG11G015660 Citrullus lanatus HOM05D007294 ORTHO05D009205 3.4e-15 85.1 87 59.8
Gorai.009G244600 Gossypium raimondii HOM05D007294 ORTHO05D009205 3.4e-15 85.1 85 57.6
Oeu026142.1 Olea europaea HOM05D007294 ORTHO05D009205 3.4e-15 85.1 75 58.7
TWI12G0925 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 3.4e-15 85.1 49 79.6
Aa31LG9G14290 Aethionema arabicum HOM05D007294 ORTHO05D009205 7.7e-15 84.0 93 54.8
CsaV3_4G028350 Cucumis sativus L. HOM05D007294 ORTHO05D009205 7.7e-15 84.0 93 53.8
Duzib093G0485 Durio zibethinus HOM05D007294 ORTHO05D009205 1.3e-14 83.2 91 52.7
Glyma.04G251200 Glycine max HOM05D007294 ORTHO05D009205 1.3e-14 83.2 90 56.7
Sopen11g007690 Solanum pennellii HOM05D007294 ORTHO05D009205 1.3e-14 83.2 76 57.9
PGSC0003DMG400000918 Solanum tuberosum HOM05D007294 ORTHO05D009205 1.3e-14 83.2 76 57.9
MELO3C010470.2 Cucumis melo HOM05D007294 ORTHO05D009205 2.2e-14 82.4 91 56.0
BcaB05g23935 Brassica carinata HOM05D007294 ORTHO05D009205 2.9e-14 82.0 88 58.0
Sp6g09730 Schrenkiella parvula HOM05D007294 ORTHO05D009205 2.9e-14 82.0 55 74.5
BcaC05g27437 Brassica carinata HOM05D007294 ORTHO05D009205 3.8e-14 81.6 56 75.0
Ca_15198_v3 Cicer arietinum L. HOM05D007294 ORTHO05D009205 3.8e-14 81.6 95 55.8
CSS0038217 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 6.5e-14 80.9 96 57.3
Phvul.009G123500 Phaseolus vulgaris HOM05D007294 ORTHO05D009205 6.5e-14 80.9 94 53.2
Gohir.A05G233900 Gossypium hirsutum HOM05D007294 ORTHO05D009205 8.5e-14 80.5 52 75.0
Nitab4.5_0001086g0040 Nicotiana tabacum HOM05D007294 ORTHO05D009205 8.5e-14 80.5 97 52.6
Actinidia23070 Actinidia chinensis HOM05D007294 ORTHO05D009205 1.1e-13 80.1 90 55.6
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 1.1e-13 80.1 91 50.5
CSS0025261 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 1.1e-13 80.1 96 57.3
Solyc11g012940.2 Solanum lycopersicum HOM05D007294 ORTHO05D009205 1.1e-13 80.1 76 55.3
AT4G08280 Arabidopsis thaliana HOM05D007294 ORTHO05D009205 1.4e-13 79.7 57 73.7
Psat0s375g0040 Pisum sativum HOM05D007294 ORTHO05D009205 1.4e-13 79.7 89 55.1
Migut.N03292 Erythranthe guttata HOM05D007294 ORTHO05D009205 2.5e-13 79.0 82 56.1
C05p33890 Brassica napus HOM05D007294 ORTHO05D009205 4.2e-13 78.2 56 73.2
BolC5t32124H Brassica oleracea HOM05D007294 ORTHO05D009205 4.2e-13 78.2 56 73.2
Cc10_g10930 Coffea canephora HOM05D007294 ORTHO05D009205 5.5e-13 77.8 97 49.5
Nn2g14282 Nelumbo nucifera HOM05D007294 ORTHO05D009205 5.5e-13 77.8 42 83.3
MSTRG.22416 Avicennia marina HOM05D007294 ORTHO05D009205 7.2e-13 77.4 65 63.1
BraA05t20931Z Brassica rapa HOM05D007294 ORTHO05D009205 7.2e-13 77.4 89 55.1
Carub.0006s2684 Capsella rubella HOM05D007294 ORTHO05D009205 9.4e-13 77.0 57 71.9
Thhalv10029072m.g Eutrema salsugineum HOM05D007294 ORTHO05D009205 9.4e-13 77.0 86 54.7
Lj1g0002873 Lotus japonicus HOM05D007294 ORTHO05D009205 9.4e-13 77.0 94 54.3
Medtr3g072590 Medicago truncatula HOM05D007294 ORTHO05D009205 1.6e-12 76.3 93 49.5
Nitab4.5_0002798g0020 Nicotiana tabacum HOM05D007294 ORTHO05D009205 2.1e-12 75.9 96 53.1
AUR62004727 Chenopodium quinoa HOM05D007294 ORTHO05D009205 2.7e-12 75.5 86 50.0
VMungo1309G1993 Vigna mungo HOM05D007294 ORTHO05D009205 2.7e-12 75.5 86 55.8
SalBow6G4857 Salvia bowleyana HOM05D007294 ORTHO05D009205 4.6e-12 74.7 59 62.7
unitig_61.g26063 Utricularia gibba HOM05D007294 ORTHO05D009205 4.6e-12 74.7 56 64.3
CAN.G127.6 Capsicum annuum HOM05D007294 ORTHO05D009205 7.9e-12 73.9 59 61.0
Lsat_1_v5_gn_6_112740 Lactuca sativa HOM05D007294 ORTHO05D009205 1.4e-11 73.2 105 45.7
ATR0693G390 Amborella trichopoda HOM05D007294 ORTHO05D009205 2.3e-11 72.4 91 45.1
AL6G42020 Arabidopsis lyrata HOM05D007294 ORTHO05D009205 2.3e-11 72.4 85 54.1
CDE08G0173 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 2.3e-11 72.4 46 69.6
HanXRQChr05g0151051 Helianthus annuus HOM05D007294 ORTHO05D009205 3.9e-11 71.6 92 47.8
Sc01g0001240 Simmondsia chinensis HOM05D007294 ORTHO05D009205 5.1e-11 71.2 82 53.7
AUR62023647 Chenopodium quinoa HOM05D007294 ORTHO05D009205 1.5e-10 69.7 94 45.7
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 1.5e-10 69.7 55 58.2
Dinv40402 Davidia involucrata HOM05D007294 ORTHO05D009205 2.0e-10 69.3 74 58.1
Cfa015999 Carpinus fangiana HOM05D000760 ORTHO05D009205 2.5e-10 68.9 40 75.0
ECA246G4672 Erigeron canadensis HOM05D007294 ORTHO05D009205 4.3e-10 68.2 97 49.5
SMO145G0156 Selaginella moellendorffii HOM05D007294 ORTHO05D009205 4.3e-10 68.2 64 56.2
Os02g0767900 Oryza sativa ssp. japonica HOM05D007294 ORTHO05D009205 9.7e-10 67.0 92 43.5
SGA_v2.0_scaffold25G11113 Striga asiatica HOM05D007294 ORTHO05D009205 1.3e-09 66.6 57 57.9
DCAR_014100 Daucus carota HOM05D007294 ORTHO05D009205 2.8e-09 65.5 72 54.2
Pp3c23_9240 Physcomitrium patens HOM05D007294 ORTHO05D009205 2.8e-09 65.5 46 60.9
CDE04G3292 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 4.1e-08 61.6 84 45.2
CBR_g48307 Chara braunii HOM05D007294 ORTHO05D009205 5.9e-07 57.8 46 58.7
Zm00001eb256090 Zea mays HOM05D007294 ORTHO05D009205 5.0e-06 54.7 89 38.2


User provided reference genes

Program Settings