Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc36.178 Carica papaya HOM05D000076 ORTHO05D015584 1.1e-71 273.5 168 100.0
Ciclev10000706m.g Citrus clementina HOM05D000076 ORTHO05D002730 8.8e-21 104.4 90 64.4
Thecc.08G102600 Theobroma cacao HOM05D000076 ORTHO05D002730 2.6e-20 102.8 78 66.7
Atru.chr13.1120 Acer truncatum HOM05D000076 ORTHO05D002730 4.1e-18 95.5 91 58.2
Duzib041G0195 Durio zibethinus HOM05D000076 ORTHO05D002730 1.2e-17 94.0 78 64.1
Prupe.1G522600 Prunus persica HOM05D000076 ORTHO05D002730 4.5e-17 92.0 91 58.2
Gohir.A06G033700 Gossypium hirsutum HOM05D000076 ORTHO05D002730 5.0e-16 88.6 80 60.0
Haze_18271 Corylus avellana HOM05D000076 ORTHO05D002730 1.1e-15 87.4 81 63.0
CiPaw.16G033100 Carya illinoinensis HOM05D000076 ORTHO05D002730 5.6e-15 85.1 81 63.0
Haze_18275 Corylus avellana HOM05D000076 ORTHO05D002730 5.6e-15 85.1 81 61.7
Sed0019731 Sechium edule HOM05D000076 ORTHO05D002730 5.6e-15 85.1 81 55.6
Cfa017890 Carpinus fangiana HOM05D000076 ORTHO05D002730 9.5e-15 84.3 80 62.5
ClCG08G011300 Citrullus lanatus HOM05D000076 ORTHO05D002730 9.5e-15 84.3 81 56.8
Gorai.010G038100 Gossypium raimondii HOM05D000076 ORTHO05D002730 1.2e-14 84.0 69 60.9
Duzib093G1793 Durio zibethinus HOM05D000076 ORTHO05D002730 2.1e-14 83.2 78 56.4
Manes.02G149400 Manihot esculenta HOM05D000076 ORTHO05D002730 4.7e-14 82.0 90 54.4
MD15G1374100 Malus domestica HOM05D000076 ORTHO05D002730 8.0e-14 81.3 87 51.7
GSVIVG01009080001 Vitis vinifera HOM05D000076 ORTHO05D002730 1.0e-13 80.9 87 58.6
Gohir.D06G034600 Gossypium hirsutum HOM05D000076 ORTHO05D002730 1.4e-13 80.5 69 60.9
FvH4_5g36600 Fragaria vesca HOM05D000076 ORTHO05D002730 3.0e-13 79.3 79 58.2
FAN13G3047 Fragaria x ananassa HOM05D000076 ORTHO05D002730 3.0e-13 79.3 79 58.2
FAN18G1411 Fragaria x ananassa HOM05D000076 ORTHO05D002730 3.0e-13 79.3 79 58.2
MD08G1188100 Malus domestica HOM05D000076 ORTHO05D002730 3.0e-13 79.3 72 59.7
TAR625G0394 Trochodendron aralioides HOM05D000076 ORTHO05D002730 3.0e-13 79.3 80 58.8
Actinidia10344 Actinidia chinensis HOM05D000076 ORTHO05D002730 4.0e-13 79.0 88 55.7
CANSAT25G1638 Cannabis sativa HOM05D000076 ORTHO05D002730 4.0e-13 79.0 89 55.1
PGR042G0574 Punica granatum HOM05D000076 ORTHO05D002730 4.0e-13 79.0 91 51.6
RcHm_v2.0_Chr7g0242381 Rosa chinensis HOM05D000076 ORTHO05D002730 4.0e-13 79.0 79 58.2
FAN04G0318 Fragaria x ananassa HOM05D000076 ORTHO05D015584 8.9e-13 77.8 79 57.0
FAN08G3484 Fragaria x ananassa HOM05D000076 ORTHO05D002730 8.9e-13 77.8 77 58.4
Nn5g30006 Nelumbo nucifera HOM05D000076 ORTHO05D002730 8.9e-13 77.8 91 53.8
CiPaw.15G046200 Carya illinoinensis HOM05D000076 ORTHO05D002730 1.2e-12 77.4 81 56.8
CsaV3_2G029870 Cucumis sativus L. HOM05D000076 ORTHO05D002730 2.0e-12 76.6 81 53.1
HanXRQChr02g0040291 Helianthus annuus HOM05D000076 ORTHO05D002730 2.2e-11 73.2 89 52.8
Nitab4.5_0010488g0050 Nicotiana tabacum HOM05D000076 ORTHO05D002730 4.9e-11 72.0 81 56.8
Nitab4.5_0000786g0060 Nicotiana tabacum HOM05D000076 ORTHO05D002730 8.3e-11 71.2 81 55.6
DCAR_012885 Daucus carota HOM05D000076 ORTHO05D002730 1.1e-10 70.9 85 49.4
Peaxi162Scf00030g02223 Petunia axillaris HOM05D000076 ORTHO05D002730 1.1e-10 70.9 81 53.1
Lsat_1_v5_gn_1_3200 Lactuca sativa HOM05D000076 ORTHO05D002730 1.8e-10 70.1 89 51.7
Manes.18G064150 Manihot esculenta HOM05D000076 ORTHO05D002730 1.8e-10 70.1 84 52.4
ECA247G0965 Erigeron canadensis HOM05D000076 ORTHO05D002730 3.2e-10 69.3 82 51.2
vmacro21292 Vaccinium macrocarpon HOM05D000076 ORTHO05D002730 3.2e-10 69.3 84 51.2
SalBow2G0700 Salvia bowleyana HOM05D000076 ORTHO05D002730 4.1e-10 68.9 81 53.1
SalBow2G2024 Salvia bowleyana HOM05D000076 ORTHO05D015584 4.1e-10 68.9 81 53.1
Sc01g0000790 Simmondsia chinensis HOM05D000076 ORTHO05D002730 5.4e-10 68.6 81 51.9
CSS0007840 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002730 9.2e-10 67.8 88 48.9
CAN.G857.12 Capsicum annuum HOM05D000076 ORTHO05D002730 4.6e-09 65.5 72 54.2
PGSC0003DMG400030835 Solanum tuberosum HOM05D000076 ORTHO05D002730 4.6e-09 65.5 81 54.3
vmacro04710 Vaccinium macrocarpon HOM05D000076 ORTHO05D002730 5.9e-09 65.1 88 47.7
Hma1.2p1_1148F.1_g261610 Hydrangea macrophylla HOM05D000076 ORTHO05D002730 1.0e-08 64.3 89 48.3
Solyc04g074670.4 Solanum lycopersicum HOM05D000076 ORTHO05D002730 1.0e-08 64.3 81 53.1
COL.COLO4_12013 Corchorus olitorius HOM05D000076 ORTHO05D002730 1.3e-08 63.9 52 65.4
HanXRQChr05g0149641 Helianthus annuus HOM05D000076 ORTHO05D002730 1.3e-08 63.9 89 49.4
Sc26g0000190 Simmondsia chinensis HOM05D000076 ORTHO05D002730 1.3e-08 63.9 84 46.4
Nn1g05451 Nelumbo nucifera HOM05D000076 ORTHO05D002730 3.0e-08 62.8 57 54.4
Sp1g19940 Schrenkiella parvula HOM05D000076 ORTHO05D002730 3.0e-08 62.8 95 41.1
Sopen04g029640 Solanum pennellii HOM05D000076 ORTHO05D002730 3.9e-08 62.4 81 51.9
SGA_v2.0_scaffold28G11903 Striga asiatica HOM05D000076 ORTHO05D002730 5.0e-08 62.0 91 48.4
CSS0042131 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002730 6.6e-08 61.6 81 48.1
Gohir.A05G265900 Gossypium hirsutum HOM05D000076 ORTHO05D002730 8.6e-08 61.2 86 43.0
Potri.005G161800 Populus trichocarpa HOM05D000076 ORTHO05D002730 1.1e-07 60.8 81 43.2
Oeu007453.2 Olea europaea HOM05D000076 ORTHO05D002730 1.5e-07 60.5 82 50.0
Potri.002G100400 Populus trichocarpa HOM05D000076 ORTHO05D002730 4.3e-07 58.9 82 42.7
Eucgr.B00039 Eucalyptus grandis HOM05D000076 ORTHO05D002730 1.6e-06 57.0 106 40.6
Nitab4.5_0001896g0100 Nicotiana tabacum HOM05D000076 ORTHO05D002730 2.1e-06 56.6 79 44.3
ClCG11G014270 Citrullus lanatus HOM05D000076 ORTHO05D002730 2.8e-06 56.2 92 43.5
Gorai.009G280200 Gossypium raimondii HOM05D000076 ORTHO05D002730 2.8e-06 56.2 86 40.7
Gohir.D05G268000 Gossypium hirsutum HOM05D000076 ORTHO05D002730 4.7e-06 55.5 86 40.7
Cc10_g06710 Coffea canephora HOM05D000076 ORTHO05D002730 6.2e-06 55.1 85 41.2
QL02p002473 Quercus lobata HOM05D000076 ORTHO05D002730 6.2e-06 55.1 72 51.4


User provided reference genes

Program Settings