Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 5.1e-66 254.2 124 100.0
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 2.5e-60 235.3 124 93.5
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 7.2e-52 207.2 124 83.1
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 9.3e-52 206.8 124 83.1
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 1.2e-51 206.5 124 80.6
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.6e-51 206.1 124 82.3
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 2.1e-51 205.7 124 79.0
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 6.1e-51 204.1 124 79.8
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 6.1e-51 204.1 123 82.1
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 7.9e-51 203.8 124 79.0
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.0e-50 203.4 124 77.4
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 1.3e-50 203.0 124 79.0
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.8e-50 202.6 124 83.1
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 3.0e-50 201.8 123 78.9
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 3.9e-50 201.4 126 77.8
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 3.9e-50 201.4 122 81.1
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 5.1e-50 201.1 124 76.6
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 6.7e-50 200.7 126 77.8
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 6.7e-50 200.7 126 77.8
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 8.7e-50 200.3 125 77.6
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 8.7e-50 200.3 125 80.8
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 8.7e-50 200.3 124 82.3
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 1.1e-49 199.9 125 79.2
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.1e-49 199.9 124 79.0
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.5e-49 199.5 124 78.2
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.5e-49 199.5 124 79.0
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.9e-49 199.1 124 77.4
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.9e-49 199.1 124 79.0
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.9e-49 199.1 125 77.6
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 77.4
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 77.4
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 79.0
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.5e-49 198.7 124 78.2
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.3e-49 198.4 125 76.8
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 3.3e-49 198.4 124 79.0
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 3.3e-49 198.4 125 76.0
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.3e-49 198.0 124 78.2
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 4.3e-49 198.0 124 75.0
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 7.4e-49 197.2 124 79.8
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 7.4e-49 197.2 124 80.6
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 7.4e-49 197.2 126 75.4
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 9.7e-49 196.8 124 79.0
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 9.7e-49 196.8 124 79.0
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 9.7e-49 196.8 124 78.2
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 1.3e-48 196.4 124 77.4
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-48 196.4 125 78.4
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.3e-48 196.4 125 78.4
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.3e-48 196.4 125 78.4
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 1.6e-48 196.1 124 77.4
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 2.2e-48 195.7 124 76.6
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.2e-48 195.7 124 78.2
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.2e-48 195.7 126 75.4
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.8e-48 195.3 123 78.9
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 2.8e-48 195.3 125 75.2
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 2.8e-48 195.3 122 77.9
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 3.7e-48 194.9 128 73.4
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 3.7e-48 194.9 128 73.4
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 3.7e-48 194.9 124 77.4
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 3.7e-48 194.9 124 77.4
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 3.7e-48 194.9 124 78.2
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 3.7e-48 194.9 124 77.4
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 4.8e-48 194.5 124 75.8
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 4.8e-48 194.5 124 77.4
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.8e-48 194.5 124 75.8
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 6.3e-48 194.1 124 78.2
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 8.2e-48 193.7 124 78.2
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 74.4
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 8.2e-48 193.7 123 75.6
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.4e-47 193.0 124 74.2
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.4e-47 193.0 124 76.6
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 1.8e-47 192.6 129 72.9
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 1.8e-47 192.6 124 76.6
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 76.8
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.8e-47 192.6 124 77.4
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 1.8e-47 192.6 124 76.6
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 2.4e-47 192.2 122 77.0
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 3.1e-47 191.8 125 74.4
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.1e-47 191.8 125 74.4
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 4.1e-47 191.4 127 71.7
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 4.1e-47 191.4 127 71.7
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 4.1e-47 191.4 124 75.8
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 4.1e-47 191.4 125 76.0
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 5.3e-47 191.0 125 72.8
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 5.3e-47 191.0 124 75.8
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.0e-47 190.3 124 75.8
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.2e-46 189.9 124 75.8
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 1.2e-46 189.9 124 75.0
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.2e-46 189.9 125 74.4
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.5e-46 189.5 125 76.0
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 1.5e-46 189.5 124 75.8
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.0e-46 189.1 125 75.2
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 2.0e-46 189.1 124 75.0
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 2.6e-46 188.7 124 74.2
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 2.6e-46 188.7 127 70.9
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 3.4e-46 188.3 122 75.4
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 3.4e-46 188.3 124 75.0
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 4.5e-46 188.0 124 74.2
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 4.5e-46 188.0 124 75.8
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 4.5e-46 188.0 124 72.6
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 5.9e-46 187.6 124 74.2
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 5.9e-46 187.6 124 75.0
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 5.9e-46 187.6 124 70.2
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 5.9e-46 187.6 124 75.0
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 5.9e-46 187.6 124 75.0
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 7.7e-46 187.2 124 74.2
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 7.7e-46 187.2 125 75.2
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.3e-45 186.4 124 75.0
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.3e-45 186.4 124 75.8
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.3e-45 186.4 124 73.4
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 1.3e-45 186.4 124 75.0
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.3e-45 186.4 122 73.8
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 2.9e-45 185.3 117 79.5
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 2.9e-45 185.3 124 75.8
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.8e-45 184.9 125 74.4
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 3.8e-45 184.9 124 73.4
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.0e-45 184.5 125 73.6
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 5.0e-45 184.5 124 73.4
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 5.0e-45 184.5 124 72.6
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 5.0e-45 184.5 124 74.2
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 6.5e-45 184.1 124 73.4
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 8.5e-45 183.7 124 73.4
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.4e-44 183.0 117 77.8
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 1.4e-44 183.0 124 73.4
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.5e-44 182.2 125 72.0
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 2.5e-44 182.2 125 70.4
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 3.2e-44 181.8 124 71.8
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.2e-43 179.9 118 74.6
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 6.1e-43 177.6 124 70.2
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 6.1e-43 177.6 124 72.6
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 1.0e-42 176.8 117 74.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.4e-42 176.4 123 71.5
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.4e-42 176.4 123 71.5
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 1.4e-42 176.4 122 71.3
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 1.8e-42 176.0 125 70.4
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.3e-42 175.6 113 75.2
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.3e-42 175.6 123 69.1
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 2.5e-41 172.2 124 64.5
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 5.7e-41 171.0 123 69.9
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 3.7e-40 168.3 123 68.3
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 6.3e-40 167.5 124 66.1
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 4.1e-39 164.9 117 70.1
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 5.3e-39 164.5 124 64.5
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 9.1e-39 163.7 124 65.3
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 1.5e-38 162.9 122 66.4
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 2.0e-38 162.5 116 69.0
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 4.5e-38 161.4 124 63.7
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.3e-37 159.8 117 67.5
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 1.7e-37 159.5 119 65.5
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.1e-36 156.8 115 68.7
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 4.2e-36 154.8 124 66.1
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.1e-35 152.5 110 66.4
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 4.7e-35 151.4 123 64.2
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 3.9e-34 148.3 123 60.2
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 3.3e-33 145.2 132 53.0
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 4.8e-32 141.4 131 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 6.3e-32 141.0 125 58.4
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.5e-30 135.2 88 72.7
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 6.5e-29 131.0 107 64.5
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.9e-28 129.4 123 53.7
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.0e-26 123.6 132 47.7
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 1.2e-22 110.2 124 50.0
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.0e-21 107.1 107 55.1
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.7e-21 106.3 116 49.1
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 6.1e-19 97.8 123 43.9
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 3.0e-18 95.5 68 64.7
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.8e-16 88.2 64 60.9
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.2e-12 75.1 58 62.1
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 4.9e-08 61.6 39 66.7


User provided reference genes

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