Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.2e-108 395.6 194 100.0
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 6.9e-94 347.4 188 92.0
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.2e-93 346.7 188 91.5
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.2e-93 346.7 188 91.5
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.2e-93 346.7 188 90.4
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.5e-93 346.3 188 91.5
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 4.5e-93 344.7 188 89.9
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 1.0e-92 343.6 188 89.4
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.3e-92 343.2 188 90.4
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 1.3e-92 343.2 188 88.8
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.7e-92 342.8 188 89.9
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.2e-92 342.4 188 89.9
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 2.2e-92 342.4 188 89.9
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 2.9e-92 342.0 188 88.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 5.0e-92 341.3 188 90.4
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 6.5e-92 340.9 188 89.4
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 8.5e-92 340.5 188 89.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 8.5e-92 340.5 187 89.3
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 8.5e-92 340.5 188 88.8
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 8.5e-92 340.5 188 88.8
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.1e-91 340.1 188 88.3
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.4e-91 339.7 188 89.4
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.9e-91 339.3 188 88.8
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.5e-91 339.0 187 89.3
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 3.2e-91 338.6 187 88.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 3.2e-91 338.6 188 89.4
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 5.5e-91 337.8 188 87.2
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 5.5e-91 337.8 188 86.7
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 5.5e-91 337.8 188 87.8
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 7.2e-91 337.4 188 86.2
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 7.2e-91 337.4 187 87.2
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 7.2e-91 337.4 187 87.2
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 7.2e-91 337.4 188 87.8
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 7.2e-91 337.4 188 87.8
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 9.4e-91 337.0 177 92.7
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.2e-90 336.7 187 88.2
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.2e-90 336.7 188 88.8
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.6e-90 336.3 188 87.8
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.6e-90 336.3 188 87.2
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.6e-90 336.3 188 87.2
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.6e-90 336.3 188 87.2
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.6e-90 336.3 188 87.2
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.6e-90 336.3 187 87.7
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.1e-90 335.9 188 86.2
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 2.7e-90 335.5 188 89.4
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.7e-90 335.5 188 85.6
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.7e-90 335.5 188 88.8
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.7e-90 335.5 188 88.3
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.7e-90 335.5 188 88.3
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 2.7e-90 335.5 188 88.8
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 2.7e-90 335.5 187 88.2
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 4.6e-90 334.7 188 86.2
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.6e-90 334.7 188 86.7
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 7.9e-90 334.0 188 87.8
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.8e-89 332.8 188 87.2
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.8e-89 332.8 188 85.1
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.3e-89 332.4 188 84.6
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 2.3e-89 332.4 188 87.2
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.9e-89 331.6 187 86.1
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.9e-89 331.6 187 86.1
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.9e-89 331.6 188 87.2
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.9e-89 331.6 188 87.2
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 3.9e-89 331.6 188 87.2
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 3.9e-89 331.6 187 86.1
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.5e-88 329.7 188 83.0
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 3.3e-88 328.6 188 87.2
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 5.7e-88 327.8 188 84.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 7.4e-88 327.4 187 85.0
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 9.7e-88 327.0 188 85.6
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.7e-87 326.2 187 82.4
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 1.7e-87 326.2 188 85.1
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.2e-87 325.9 187 81.8
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 2.2e-87 325.9 188 85.1
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 2.8e-87 325.5 187 81.3
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 6.3e-87 324.3 187 84.5
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 1.1e-86 323.6 187 82.9
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.8e-86 322.8 187 84.0
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.8e-86 322.8 188 83.5
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.4e-86 322.4 188 84.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 3.1e-86 322.0 188 84.6
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 3.1e-86 322.0 187 85.0
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 4.1e-86 321.6 188 85.1
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 4.1e-86 321.6 188 85.1
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 5.3e-86 321.2 188 83.5
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 5.3e-86 321.2 188 82.4
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 6.9e-86 320.9 188 84.0
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 6.9e-86 320.9 188 83.0
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.2e-85 320.1 187 83.4
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.5e-85 319.7 188 83.5
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 2.6e-85 318.9 188 80.9
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 2.6e-85 318.9 188 80.9
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 4.5e-85 318.2 188 80.9
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 5.9e-85 317.8 198 80.8
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.7e-84 316.2 188 81.9
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 3.8e-84 315.1 199 80.4
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 5.0e-84 314.7 184 83.2
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 6.5e-84 314.3 187 81.8
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 7.2e-83 310.8 188 79.3
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.0e-81 307.0 177 81.4
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.4e-81 306.6 187 80.2
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 5.1e-81 304.7 171 87.7
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 8.8e-81 303.9 187 79.1
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.1e-80 303.5 187 79.1
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.5e-80 303.1 176 83.5
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.6e-80 302.4 187 78.6
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 2.6e-80 302.4 176 82.4
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 2.6e-80 302.4 176 82.4
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.6e-80 302.4 176 82.4
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.6e-80 302.4 176 82.4
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 2.6e-80 302.4 176 83.0
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 2.6e-80 302.4 188 76.6
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.4e-80 300.8 187 78.6
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 9.7e-80 300.4 187 78.6
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 2.8e-79 298.9 176 81.8
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 3.7e-79 298.5 176 80.7
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 6.3e-79 297.7 176 81.2
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 8.2e-79 297.4 176 81.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-78 296.6 176 80.7
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-78 296.2 176 80.7
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.8e-78 296.2 176 80.7
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.8e-78 296.2 176 80.7
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.8e-78 296.2 176 80.7
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.4e-78 295.8 176 81.2
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 4.1e-78 295.0 291 56.7
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 5.3e-78 294.7 176 80.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 7.0e-62 241.1 420 39.0
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.6e-61 240.0 167 64.1
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.4e-54 214.9 198 61.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.3e-51 204.5 187 60.4
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 1.4e-49 200.3 175 53.1
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 3.0e-49 199.1 176 53.4
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.2e-39 166.4 183 44.3
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 3.0e-36 156.0 161 46.6
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.3e-31 140.6 72 94.4
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.6e-27 125.2 172 34.9
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.0e-25 119.0 188 41.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 5.2e-25 118.6 188 41.5
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.2e-24 117.5 177 37.9
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 9.9e-24 114.4 71 76.1
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.8e-23 112.5 96 62.5
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 4.6e-21 105.5 172 33.7


User provided reference genes

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