Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 6.5e-238 827.0 424 100.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 8.8e-110 401.4 480 49.6
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 6.6e-105 385.2 347 59.1
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 1.5e-104 384.0 477 50.1
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 3.0e-102 376.3 361 56.2
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 8.9e-102 374.8 475 49.5
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 6.3e-100 368.6 478 48.1
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 5.6e-96 355.5 475 45.9
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 7.3e-96 355.1 475 45.9
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 7.3e-96 355.1 473 46.7
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 3.6e-95 352.8 452 48.0
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 6.1e-95 352.1 481 45.1
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.1e-95 352.1 476 48.1
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 6.1e-95 352.1 476 48.1
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 1.8e-94 350.5 475 44.0
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 6.8e-94 348.6 476 47.9
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 8.9e-94 348.2 473 46.1
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-93 347.8 356 53.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.5e-93 347.4 364 52.7
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 1.7e-92 344.0 359 51.0
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 4.9e-92 342.4 448 49.3
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 6.4e-92 342.0 358 52.2
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-91 341.3 422 49.1
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.4e-91 340.9 486 44.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.7e-90 336.7 476 46.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.3e-89 334.3 353 51.8
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 2.3e-89 333.6 483 45.5
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 7.3e-88 328.6 425 47.8
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.1e-86 324.7 487 42.9
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 8.9e-86 321.6 448 45.8
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.5e-85 320.9 475 43.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.0e-85 320.5 353 50.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.0e-85 320.5 356 49.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.4e-85 319.7 355 49.6
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 4.4e-85 319.3 464 44.6
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 4.4e-85 319.3 362 48.9
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 6.4e-84 315.5 483 43.9
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.9e-83 313.9 357 49.6
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.2e-82 311.2 474 44.5
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 7.8e-82 308.5 451 45.2
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.3e-81 307.8 356 48.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.0e-81 306.6 362 48.6
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 1.2e-79 301.2 388 46.1
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.8e-78 297.4 358 48.0
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 4.0e-78 296.2 433 41.8
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 8.9e-78 295.0 357 47.9
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 1.5e-77 294.3 356 46.6
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.4e-77 293.1 482 40.2
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 5.8e-77 292.4 364 46.7
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 9.9e-77 291.6 358 47.5
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 9.9e-77 291.6 480 40.0
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 6.4e-76 288.9 360 45.8
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 6.4e-76 288.9 360 45.8
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 6.4e-76 288.9 482 39.2
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 8.3e-76 288.5 360 46.7
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 5.4e-75 285.8 360 46.1
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 7.1e-75 285.4 470 41.3
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.6e-74 282.7 354 47.5
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.0e-73 281.6 408 42.4
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 3.9e-73 279.6 353 46.2
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 6.6e-73 278.9 351 47.0
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.9e-72 277.3 460 38.7
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.5e-72 276.9 347 47.0
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 5.6e-72 275.8 351 46.7
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 1.2e-71 274.6 477 38.6
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 5.2e-70 269.2 360 44.4
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 5.2e-70 269.2 482 40.5
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 6.8e-70 268.9 360 44.4
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 2.0e-69 267.3 367 45.8
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 9.9e-69 265.0 358 44.4
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.7e-68 264.2 478 37.4
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 2.2e-68 263.8 358 43.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 6.4e-68 262.3 358 43.3
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.9e-67 260.8 402 41.0
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 5.4e-67 259.2 364 42.3
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.1e-67 258.8 306 47.7
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 7.8e-66 255.4 352 43.8
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 3.0e-65 253.4 352 44.3
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.5e-64 251.1 360 41.4
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.5e-64 250.4 477 39.2
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-63 247.3 477 39.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-63 247.3 477 39.4
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 2.1e-63 247.3 354 41.2
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.4e-62 243.8 477 39.0
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.1e-62 243.4 336 43.2
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.0e-62 243.0 477 38.8
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 2.6e-61 240.4 470 36.0
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.8e-60 236.5 476 37.8
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 8.4e-60 235.3 469 35.6
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.1e-59 235.0 368 39.1
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.4e-59 234.6 368 38.9
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.2e-59 233.0 469 35.4
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 2.3e-57 227.3 352 38.4
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 2.8e-55 220.3 367 36.2
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.8e-54 217.6 396 36.6
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.4e-52 209.1 340 40.3
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.1e-51 208.4 377 37.1
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 4.2e-51 206.5 363 37.2
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.5e-50 203.4 387 35.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 2.4e-46 190.7 384 35.7
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 5.3e-46 189.5 363 36.4
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.2e-45 188.3 230 45.7
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 2.6e-45 187.2 340 37.4
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 3.5e-42 176.8 391 32.2
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.0e-41 175.3 179 52.5
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.1e-40 171.8 422 33.4
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.5e-40 171.4 355 34.4
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.3e-40 169.9 359 35.4
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 5.6e-40 169.5 383 37.1
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.8e-39 167.2 173 50.9
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 3.1e-38 163.7 473 31.1
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 3.1e-38 163.7 473 31.1
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.5e-37 161.4 237 41.4
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 2.6e-37 160.6 334 36.2
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 7.6e-37 159.1 358 32.1
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 4.2e-35 153.3 163 53.4
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 5.5e-35 152.9 224 37.9
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 6.7e-33 146.0 155 49.7
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 6.3e-31 139.4 232 38.8
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.4e-30 137.5 138 50.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 5.3e-30 136.3 197 41.6
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.4e-27 128.3 222 36.0
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.5e-27 127.5 230 38.3
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.8e-25 121.3 172 39.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 7.4e-24 115.9 153 40.5
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.7e-23 114.8 130 43.8
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 9.1e-22 109.0 161 39.1
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 2.6e-21 107.5 112 52.7
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 5.9e-21 106.3 195 36.9
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 5.9e-21 106.3 359 29.0
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 5.0e-20 103.2 167 34.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-19 102.1 317 30.9
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.3e-17 94.4 231 32.9
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.9e-17 93.6 151 41.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 7.4e-16 89.4 103 46.6
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.0e-13 81.3 133 39.1
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 5.9e-13 79.7 143 39.2
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.3e-12 78.6 105 42.9
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 6.5e-12 76.3 108 42.6
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 6.7e-09 66.2 154 29.9
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.7e-08 63.2 125 33.6
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 2.4e-06 57.8 324 23.8


User provided reference genes

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