Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 2.0e-80 302.4 154 100.0
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 8.4e-26 120.9 172 46.5
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 4.2e-25 118.6 172 45.3
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 9.3e-25 117.5 169 43.8
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 1.3e-23 113.6 172 42.4
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 1.7e-23 113.2 172 42.4
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 2.5e-22 109.4 183 38.3
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 5.6e-22 108.2 181 39.2
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 7.3e-22 107.8 187 41.2
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 9.6e-22 107.5 172 43.0
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 2.1e-21 106.3 187 36.9
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 1.8e-20 103.2 164 40.9
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 1.8e-20 103.2 179 36.9
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 9.0e-20 100.9 179 36.9
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 3.4e-19 99.0 189 34.9
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 3.4e-19 99.0 179 38.0
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 4.4e-19 98.6 188 37.8
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 5.8e-19 98.2 177 37.9
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 1.3e-18 97.1 183 37.2
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 3.8e-18 95.5 216 33.3
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 4.9e-18 95.1 174 37.9
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 6.4e-18 94.7 179 36.9
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 8.4e-18 94.4 178 36.0
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.1e-17 94.0 183 33.9
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 1.4e-17 93.6 190 35.3
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 1.4e-17 93.6 190 35.3
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 2.4e-17 92.8 179 38.0
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 3.2e-17 92.4 184 38.0
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 4.2e-17 92.0 152 41.4
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 5.4e-17 91.7 192 35.9
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 7.1e-17 91.3 178 37.1
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 7.1e-17 91.3 167 38.9
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 7.1e-17 91.3 165 38.8
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 9.3e-17 90.9 192 35.9
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 9.3e-17 90.9 185 36.8
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 1.6e-16 90.1 184 36.4
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 1.6e-16 90.1 179 35.2
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 1.6e-16 90.1 168 36.3
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 2.7e-16 89.4 191 33.5
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 2.7e-16 89.4 160 36.2
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 2.7e-16 89.4 179 35.2
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 2.7e-16 89.4 174 35.6
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 3.5e-16 89.0 187 36.9
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 4.6e-16 88.6 154 38.3
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 4.6e-16 88.6 169 37.9
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 4.6e-16 88.6 158 39.2
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 1.0e-15 87.4 191 33.0
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 1.7e-15 86.7 183 34.4
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 2.3e-15 86.3 91 54.9
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 2.3e-15 86.3 91 54.9
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 2.3e-15 86.3 180 35.6
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 6.6e-15 84.7 208 32.2
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 1.5e-14 83.6 153 38.6
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 1.5e-14 83.6 186 33.9
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 1.5e-14 83.6 190 34.7
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 1.9e-14 83.2 160 33.8
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 1.9e-14 83.2 185 34.6
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 3.3e-14 82.4 161 37.9
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 4.3e-14 82.0 182 34.1
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 4.3e-14 82.0 218 29.8
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 5.6e-14 81.6 179 33.5
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 7.3e-14 81.3 177 35.6
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 7.3e-14 81.3 185 30.8
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 9.6e-14 80.9 179 33.0
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 1.6e-13 80.1 154 37.0
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 1.6e-13 80.1 189 36.0
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 1.6e-13 80.1 173 35.8
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 2.1e-13 79.7 189 33.3
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 2.1e-13 79.7 197 35.5
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 2.8e-13 79.3 198 35.9
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 2.8e-13 79.3 179 31.8
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 3.6e-13 79.0 182 31.3
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 4.8e-13 78.6 160 38.8
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 4.8e-13 78.6 173 37.6
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 6.2e-13 78.2 203 35.0
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 6.2e-13 78.2 113 41.6
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 1.4e-12 77.0 199 35.7
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 2.4e-12 76.3 153 33.3
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 5.3e-12 75.1 142 31.0
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 6.9e-12 74.7 188 29.8
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 9.0e-12 74.3 198 30.8
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 1.2e-11 73.9 183 31.7
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 1.5e-11 73.6 188 30.3
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 2.0e-11 73.2 91 47.3
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 3.4e-11 72.4 107 43.9
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 4.5e-11 72.0 163 33.7
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 5.8e-11 71.6 72 54.2
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 2.2e-10 69.7 128 34.4
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 2.9e-10 69.3 93 48.4
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 6.4e-10 68.2 104 46.2
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.4e-09 67.0 93 46.2
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 3.2e-09 65.9 144 31.9
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 5.5e-09 65.1 91 46.2
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 7.9e-08 61.2 79 41.8
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 2.3e-07 59.7 164 29.3
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 6.7e-07 58.2 126 31.0
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 8.7e-07 57.8 137 30.7


User provided reference genes

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